Vespula pensylvanica (western yellowjacket): 122637637
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Entry
122637637 CDS
T07720
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03013
Nucleocytoplasmic transport
vps03015
mRNA surveillance pathway
vps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122637637
09122 Translation
03013 Nucleocytoplasmic transport
122637637
03015 mRNA surveillance pathway
122637637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vps03019
]
122637637
03041 Spliceosome [BR:
vps03041
]
122637637
Enzymes [BR:
vps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122637637
Messenger RNA biogenesis [BR:
vps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122637637
Spliceosome [BR:
vps03041
]
Complex C
Other components
EJC/TREX
122637637
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122637637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122637637
NCBI-ProteinID:
XP_043685834
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All DBs
Position
2:11111383..11116482
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AA seq
424 aa
AA seq
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MADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPYVKVAVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDENDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgacgatcttttggattacgaagatgaggaacaaactgaacaagtagtc
gatggaagtggagatgttcctgctaaaaaagaagtaaaaggcacatatgtgtctattcac
agcagtggttttagggattttcttcttaaaccagaaattttaagagcgatagttgattgt
ggatttgagcatccttctgaagtacaacatgaatgtattcctcaagccgtgcttggtatg
gatattctgtgtcaagcaaaatctggtatgggaaaaaccgctgtatttgtattagccaca
ttgcagcagttggagttaacagaaaaccaagtctatgtcttagtaatgtgtcatacgaga
gaacttgcatttcaaattagtaaggaatatgagagattcagcaaatacatgccttatgta
aaggtagctgttttctttggtggactaccaatccaaaaggatgaagaagttttgaagaat
acttgccctcatattgtagtaggcactccaggtcgtattcttgctcttgttcggaataaa
aagttgaaccttaaacatttgaagcacttcatacttgatgaatgcgacaaaatgcttgaa
ttgttagatatgcgcagggatgtacaggagatatttagaagcacaccacatggtaaacaa
gtcatgatgttcagcgctacactgtccaaagagatccgccctgtctgcaagaaatttatg
caagatcccatggaagtctatgttgacgacgaagcgaagctcacgttacacggcctacaa
caacattacgtgaaactcaaagaaaatgagaaaaacaagaagctttttgaattattagat
gttcttgaattcaatcaggtagtgatatttgtaaaatcagtgcaaagatgcatggctctt
gcacaacttctaacagaacaaaattttcctgctattggtatccatagaggaatgacgcaa
gaggagcgtttatcaagataccaacaattcaaagatttccaaaaacgaattttagtagct
actaatttatttggacgaggaatggacattgaacgtgttaatattgtatttaattatgac
atgcccgaagattctgatacatacctccatagagtagcacgagctggacgttttggtaca
aagggtcttgctatcacgttagtaagcgacgaaaacgacgccaaaatattgaacgatgta
caggaacgttttgatgtaaacattacagaattaccagatgaaatagaccttgcatcatat
attgaaggacgataa
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