Virgibacillus pantothenticus: KBP50_00425
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Entry
KBP50_00425 CDS
T07430
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
vpt
Virgibacillus pantothenticus
Pathway
vpt03030
DNA replication
vpt03430
Mismatch repair
vpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBP50_00425 (holB)
03430 Mismatch repair
KBP50_00425 (holB)
03440 Homologous recombination
KBP50_00425 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpt03032
]
KBP50_00425 (holB)
03400 DNA repair and recombination proteins [BR:
vpt03400
]
KBP50_00425 (holB)
Enzymes [BR:
vpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KBP50_00425 (holB)
DNA replication proteins [BR:
vpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KBP50_00425 (holB)
DNA repair and recombination proteins [BR:
vpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KBP50_00425 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
TIP49
DNApol3-delta_C
AAA
RuvB_N
Motif
Other DBs
NCBI-ProteinID:
QTY16492
LinkDB
All DBs
Position
92259..93248
Genome browser
AA seq
329 aa
AA seq
DB search
METWSEVANIQPLASKIILNSIKKDRISHAYLLQGERGTGKKAIALLIAKGLFCEKNPVS
DPCLECNACKRIASGNHPDVHWIEPDGQSIKIEQIRNLQKEFTYSGMESDQKVYIINGAE
TLTVNAANRILKFLEEPSKKTTAIMLTDNSQAILPTIRSRCQVIDLRPLHPGEFQKQLIE
QGLDQRSAILMSAITNNLQEASDKSHDESFATARRIVIQLVEILLTNPEDVYLFIHQHWV
THFKERNEQEEGLDLLLFAIKDILYYQIEHEAGMVFFAPSDELLERAAMYFSQEKLLTDL
QAVLQAKRKLKQNVHPTLVMEQLTLQMQR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggaaacatggtcagaggttgctaacatacaaccattagcaagcaaaattatattaaat
agtataaaaaaagaccggatttctcatgcgtatttgcttcagggggaacgagggactggt
aaaaaagcgattgctctcctgattgctaaagggctattttgtgaaaaaaatccagtttct
gatccttgtctagagtgtaatgcgtgtaaacgtattgcttcaggtaatcacccagatgtg
cattggattgagcctgatggacaatctattaaaatagaacagattcgaaatttgcaaaag
gaatttacatattctggcatggagtctgatcaaaaggtatatattattaatggtgctgaa
acattaacggtcaatgcagctaaccgaattttgaaattcttagaagaaccgagcaaaaaa
actaccgctattatgttaacagacaatagtcaagctatccttccgaccattcgctccaga
tgtcaggtcattgatttacgcccccttcacccaggtgaatttcaaaagcaattaatagag
caaggattggatcaacgtagtgcgatactaatgagtgccattacaaataatttacaagaa
gcatcggacaaaagtcatgacgagtcgtttgccacagcacgacggatagtgatacaatta
gttgaaatacttttaaccaatcctgaagatgtttatttattcattcatcagcattgggtg
actcatttcaaagagcgaaatgagcaggaagaaggattggatctcttgctttttgccata
aaagatattctttattaccaaatagaacatgaagctgggatggtgtttttcgccccttct
gatgaattgctggaaagagcagctatgtatttttcacaggagaaactattaactgattta
caggctgttttacaagcaaagcgaaaattgaagcaaaatgttcatcctacattagtgatg
gaacagcttacacttcaaatgcagaggtga
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