Virgibacillus pantothenticus: KBP50_00540
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Entry
KBP50_00540 CDS
T07430
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpt
Virgibacillus pantothenticus
Pathway
vpt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KBP50_00540 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpt03400
]
KBP50_00540 (mfd)
Enzymes [BR:
vpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KBP50_00540 (mfd)
DNA repair and recombination proteins [BR:
vpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KBP50_00540 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QTY16514
LinkDB
All DBs
Position
116005..119523
Genome browser
AA seq
1172 aa
AA seq
DB search
MKGIQTYLQKKEDIQSIINGVLAGMDEQLVAGLSGSARGLLVSVIRGEINKPVLLVTHQL
VQAQQLYDDLVGFVGEEDVHLYPVNELIASEIAIASPELRSQRIESLTAWSQKKSGILIA
PVAALKRILPPPAYWGKYQLPFKLGNEIDVDHYLTSLIDMGYDRVSMVTSPGEFSKRGGI
IDIYPITEKHPIRIELFDEEIDSIRYFDAETQRSLDKLQELTVGPATELLLTESDIYAAG
ERLEEALANTLKTLKTQEAKETLAEVVQRDVERLKNLEHFPEMYKYIGYLYNTPASLLDY
LPADGQIILDEMSRIQETALHLDTEEADWYSNLLASYQMVKNSFFSFDWHAIWERMKQPR
LYMSVFLRHIPNTQPQNIVNLSSRPMQEFHGQMHLFKNELNRWEKGDYSVVVLAPDQQRA
EKIHSIFMDYDIEFGIAKYLQLPVDKPTIAVGNISSGVELPMHKLVLVTEQELFKKRAKR
TRKQQKISNAERIKDYQELKVGDYVVHANHGIGKYLGIETLKVNDLHKDYMLIKYSGDDK
LFVPIDQIDQVQKFVGSEGKEPKLYKLGGSEWKKVKRKVQSSVEDIADDLIKLYAEREAK
KGYAFSEDTEMQREFEALFPYQETEDQLRCIEEIKQDMERERPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVALLVPTTILAQQHFETIRERFQDYPITIGLLSRFRTRKQQKETLDG
LRKGTVDIVIGTHRILSKDVQYHDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNPIFVREAIEREMARGGQVFFLHNR
VENIEEVARELGTHIDARIAVAHGQMNESELENIIFAFLEGEFDVLVSTTIIETGVDIPN
VNTLIVNDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLKEAIDVRKEGKEVKGVKPFD
PELTLAIDAYIPDEYIHDEKQKVDIYKQFQSMETKEDAADLHDELIDRFGDYPEEVSHLF
TVATLKMLAKRERITSITEKNNKMEVLVDEKRSQQIDGAKLFEMANEYGRDVQLGTENNK
LKLVFKYTSRTKQQCYKTVEEFIDKLKYVNRS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaatacaaacatatttacagaaaaaagaagatatacaatccattatcaatggg
gtgctagcggggatggatgagcaactagtagctggattatcaggttctgctagagggctg
cttgtatctgttattcgaggtgaaattaataagcctgttctgttagttacacatcaactg
gtacaggctcagcaactatatgacgaccttgttggttttgttggtgaggaagatgttcac
ctttatcctgttaatgaactgatagcatcagaaatagctatcgcaagcccagaattacga
agtcagcggattgagtcattaactgcttggtcacaaaaaaaatctggaattttaatagcc
cctgtagctgctttaaagcggatacttccacctcctgcgtattggggaaaataccagtta
ccttttaaacttggaaatgaaattgatgtggatcattatttaacgtcattaatagatatg
ggatatgatcgcgtttccatggttacttctcctggtgaatttagtaagcgcggcgggatt
atcgatatatatccaatcacagaaaagcacccgattcgaattgagttatttgatgaagaa
attgattcgattcgttattttgatgctgagacgcaacgctcgttggataagctacaggag
ctaacagttggaccagcaacagagctacttttaacagaatcagacatttatgctgccgga
gagcgtttagaggaagcccttgcgaatacgttgaaaacattaaagacacaagaggcaaag
gaaacgttggcagaagtggtgcaacgtgatgtagaacggttaaaaaatctggagcatttc
ccagaaatgtataaatatattggttatttgtacaatacccctgctagcttactagattat
ttaccggcagatggtcagattatccttgatgaaatgagccggattcaggagacagccttg
catttggatacagaagaagctgattggtatagtaatttactagcttcttaccaaatggtg
aagaatagtttcttttcgtttgattggcatgcaatttgggagcggatgaagcagccgcgc
ttgtacatgtctgtattcttacggcatattcctaatacacagccacaaaacattgtaaac
ttatcttcaagaccgatgcaagaatttcatggtcagatgcatttatttaaaaatgaactg
aaccgctgggaaaaaggggattattctgtcgtcgttttagcaccggaccaacagcgagca
gaaaaaattcattctatttttatggattatgatatcgagtttggtatagcgaaatattta
caactgcctgtcgataaaccaactattgctgtaggaaacatctccagtggagtagagtta
ccgatgcacaagcttgtgttagtgactgaacaagagctattcaaaaagcgcgctaaacga
acgagaaagcaacagaaaatatccaatgctgagcggattaaggattatcaggaattaaaa
gttggagattatgtcgtacatgccaaccatggaattggaaaatacctcggtattgagacg
ttgaaagtaaatgatctgcataaggattacatgctgattaaatattccggtgatgataaa
ttatttgtcccaatcgaccaaatcgatcaagtacagaaatttgtagggtcagagggcaaa
gagccgaagctgtataaactaggtggaagtgaatggaaaaaagtaaaacggaaggtgcaa
tcttctgtagaggatattgccgatgatttgattaagctctatgcagaacgtgaagcaaag
aaagggtatgctttttctgaagatactgaaatgcaacgcgaatttgaagcactattccct
tatcaggaaacagaggatcagctgcgttgtattgaagaaattaaacaagatatggaacgc
gagcgcccgatggatcgcctgctttgcggtgatgttggatacggaaaaacagaagtggcc
attcgagcagctttcaaagcgattgctgatgggaagcaagttgcgttattagttccgact
acgattctggcacagcaacattttgagacaataagagaacgtttccaagattatccaatc
accattggtttattaagcagatttcgaacgagaaagcagcagaaggaaacattggatggg
ctaagaaaagggaccgttgatattgtaattggaacacatcgtatcttatccaaagatgtt
caatatcatgatttaggtttattaattgttgatgaagagcaacgttttggagtaaagcat
aaggagaaaattaagcagctaaaaacaaatgtagatgtgcttacgttgacagctacacct
attcctcgtacgttgcatatgtctatgttaggagtacgtgacctttctgttatcgaaacg
cctcccgaaaatcggtttccgattcaaacgtacgtgatggaatataatccgatctttgtt
cgagaggctattgagcgcgaaatggcacgtggaggacaggtattctttcttcataaccgt
gtagaaaatattgaagaagtagctagagaattaggtacccatattgatgcgaggatcgca
gttgcacatgggcaaatgaatgagtcagaattggaaaatatcatttttgcctttttagaa
ggggaatttgatgtattggtcagcactaccatcatagaaacaggtgttgatataccgaat
gtaaacaccttaattgtgaacgacgcggaccgaatgggattaagtcagttatatcaattg
cgtggtcgtgtagggcgttccaatcgggtagcgtatgcttactttacgtatcgaaaagat
aaagtgctaacagaagtggcagaaaaacgtttacaagcaattaaagaatttacggaacta
ggatctggatttaaaatcgcgatgcgagatttatcgattcgcggagctggaaatctgctc
ggtgcccagcagcatggatttatcgattctgttggttttgatatgtattcacaaatgcta
aaagaagcgattgatgttagaaaagaaggtaaagaagtgaagggtgtcaaaccgtttgac
ccagaactgacattagcaatcgatgcatacattccagatgaatatattcatgatgaaaag
cagaaagtggatatttataaacaatttcaatcgatggaaaccaaagaggatgctgcagat
ttacatgatgaattaattgatcggtttggtgattacccagaggaggtaagtcatttattt
acggtagctaccttgaaaatgttggcgaaacgggaacgaatcacatccatcactgagaag
aacaataaaatggaagtgctcgttgatgaaaagcgcagtcaacaaattgatggggcgaaa
ttgtttgagatggcgaatgaatatggacgagatgttcagcttggaacagaaaataataaa
ttaaagcttgtatttaaatatacgagtcgaacgaagcagcaatgttataaaaccgttgaa
gaatttatcgataaattaaaatatgtaaatcgtagttag
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