Virgibacillus pantothenticus: KBP50_09560
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Entry
KBP50_09560 CDS
T07430
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vpt
Virgibacillus pantothenticus
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpt03016
]
KBP50_09560 (truB)
Enzymes [BR:
vpt01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KBP50_09560 (truB)
Transfer RNA biogenesis [BR:
vpt03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KBP50_09560 (truB)
Prokaryotic type
KBP50_09560 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
YyzF
Motif
Other DBs
NCBI-ProteinID:
QTY18039
LinkDB
All DBs
Position
complement(2018940..2019833)
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AA seq
297 aa
AA seq
DB search
MDGILPLWKPKGLTSHDCVIKIRKMFQTKKVGHTGTLDPDVEGVLPICIGKATKIVPFLT
DTKKTYSAKLKLGVATDTEDASGNPIEEKSVEVMPEQQHIEDVMRQFIGEINQIPPMYSA
VKVKGKRLYEYARENQYVERPVRRVRIDEIQLLSTPNEQEHSIAFRVVCSKGTYIRTLCV
DIGKALGYPAHMLTLVREATGAFSNKNAVTFATIEEAIFKKQEATLLYPIQMGLTHLDVW
NVDSETAKKVLYGQKLPNNIQLRTDPFVIMHQNRVLAIYQSHEKQAGYIKPVRVFSR
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggatggaatattgccattatggaaaccaaaaggccttacttctcatgattgtgtgatt
aaaatccgcaaaatgtttcaaacaaaaaaagtaggacatacaggtacattagatccagat
gtggagggggttttacctatctgcattggaaaagcaacaaaaattgttccttttttaacc
gatacaaaaaagacatatagcgctaagctaaaattgggagtcgcgacagatacggaggat
gcgtctggtaatccgattgaggaaaaatcggtagaagtgatgccggaacaacagcatatt
gaagatgtaatgcggcaatttataggggaaattaatcaaatccctcccatgtactcagca
gttaaagtaaaagggaaaaggctatatgagtatgctagagaaaatcagtacgtggagcga
ccagtcaggcgagttaggattgatgaaatacagctactttcgactccgaatgaacaggaa
cattcgatcgcatttcgggttgtttgttcaaaaggaacctatattcgtaccttatgtgta
gacatcggaaaagctctaggataccctgcgcatatgttgacattagtaagagaggcaaca
ggagcattttccaacaaaaatgcggttacatttgctacaatagaagaggccatttttaaa
aaacaagaagctacgttattatatccaattcaaatgggtttaacccatctggatgtatgg
aatgtcgattccgagacagctaaaaaggtgttatatgggcaaaaactacctaataatatc
caattgaggacagatccatttgttatcatgcatcagaatcgtgttctagccatttatcaa
tctcatgaaaagcaagcaggctatataaagccagtccgtgtatttagtagataa
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