Virgibacillus pantothenticus: KBP50_11735
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Entry
KBP50_11735 CDS
T07430
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vpt
Virgibacillus pantothenticus
Pathway
vpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP50_11735 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpt03019
]
KBP50_11735 (rnr)
03016 Transfer RNA biogenesis [BR:
vpt03016
]
KBP50_11735 (rnr)
Enzymes [BR:
vpt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KBP50_11735 (rnr)
Messenger RNA biogenesis [BR:
vpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KBP50_11735 (rnr)
Transfer RNA biogenesis [BR:
vpt03016
]
Prokaryotic type
tRNA degradation factors
KBP50_11735 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_HELZ2
RNase_II_C_S1
OB_Dis3
S1_RRP5
TFIIE_beta
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
QTY18514
LinkDB
All DBs
Position
complement(2500875..2503043)
Genome browser
AA seq
722 aa
AA seq
DB search
MKEKIQQYFKENGTKPLTVHEIEEALEIKDATEFKELVKALNALEESGELVRTRKNRFGL
PEKMNLVRGRIQMHAKGFAFLIPDDETLDDVYIHYSDLGSAMNGDKVLVRIEKRSDSGNR
SEGTVIRILERATLQVVGTFENSRSFGFVIADDKRIPNDIFIPKDCTNGAVSGHKVIAHI
TKYPEGRKSAEGEIIHILGHKNDPGIDIMSIIYKHGIKVDFPEEVLEQAANTPESIFEEE
IQGRRDLREETIVTIDGADAKDLDDAVSVKRLDNGNYLLGVYIADVSYYIDKGSPMDEEA
FERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLGCEMEIDASGNVVSHEIFQSVIR
TNERMTYHDVNQILVENDEALRDRYKELVPMFEEMEKLAAILRRKRMNRGAIDFDFKEAK
VVVDENGKPEDVILRERSVAERLIEEFMLAANETVAEHFHWMDVPFIHRIHQDPDPDKLQ
TFFEFLAGLGYVVKGTTNEVHPQALQKVLEDVKGKPEEMIVSKLMLRSMQQAKYDPQSIG
HFGLATPFYTHFTSPIRRYPDLTVHRLIRTYLIDKKMDQHTLQKWKAELPEIAKQTSAAE
RRAVDAERETDDLKKAEFMQDKIGEEYTGVISSITNFGLFVELENTIEGLVHVSYLTDDY
YHYDQRSQAMIGERTAKMYRIGEEVQVKVVSVNIDERTIDFSIVYDEETKPKKVIKAKRM
KN
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaatacaacaatattttaaggaaaatggtacaaaaccactaacggttcat
gaaatagaggaagcgttggaaattaaagatgcgacggaatttaaagaactggtaaaagca
ctaaatgctttggaagaatctggagagcttgttcggacgcgaaaaaacagattcggctta
ccagaaaaaatgaatcttgttcgtggcagaattcaaatgcatgcgaaaggatttgccttt
ttaattccggatgacgaaacacttgatgatgtttatattcattattccgatctaggttct
gccatgaatggggacaaggtgcttgtaagaattgaaaaaagaagtgattcgggtaaccgc
tcggaaggaactgtgattcgaattttagaaagagccacactacaagtagttggcacattt
gagaatagtcgctcatttggttttgtgatcgcagatgataaacggattccaaatgacatt
tttattcctaaggattgtacaaacggtgctgttagcggacataaggtaattgcacatatt
acgaaatatccagaaggaagaaaaagtgcagaaggcgaaatcattcatatattaggacat
aaaaatgaccctggtattgatattatgtccatcatctataaacatggcattaaggtagac
tttccagaagaggtgctagaacaagcagccaacacgcctgaatcaatttttgaagaagag
attcaaggacgtagagatctgcgtgaggaaacaatcgttaccattgatggtgcggatgca
aaagacttagatgatgctgtatctgtgaagcgattggataatggaaactaccttttaggc
gtatatattgctgatgtaagctattatatcgataaaggaagtccgatggatgaggaagcc
tttgaaagagggacgagtgtttacttagttgaccgtgtgatcccgatgattccgcaccgt
ttatcaaatggaatttgttcacttaaccccaaggttgacaggttgacattaggctgtgaa
atggaaatagacgcttctggcaatgtcgtgagccacgaaatttttcaaagcgttattcga
acaaatgagcgaatgacgtatcatgatgtgaaccaaatcttagtggagaatgatgaagca
ttgcgagatcgttataaagaattggttcctatgtttgaagagatggagaaattggcagcc
attttacgccgaaagcgaatgaatcgcggcgccattgattttgattttaaagaagcaaaa
gtggtcgttgatgaaaatggcaaaccagaagatgttatattacgtgaacgctcagttgcc
gaacggctaattgaagaatttatgctggctgcgaatgaaacggtagccgaacacttccat
tggatggacgtgccgtttattcatcgtatccaccaggacccagatccagataaattacaa
acattctttgaatttttagcagggcttggctacgtggtgaaagggacgacgaatgaagtg
catccgcaggcactacaaaaggtattggaagatgtaaaaggaaagccagaagaaatgatc
gtttcgaagctaatgcttcgttcgatgcagcaggcgaaatatgatccgcaaagcattggt
cacttcggcttagcgacaccgttttatacgcatttcacgtcgccaatacgcagatatcct
gatttaacggtacaccgcttaattcgtacctatttaattgataaaaaaatggatcagcat
acgttgcaaaaatggaaagcggagctgccggaaatagccaaacaaacttccgctgccgaa
cggcgtgcggtggatgcagaacgagaaaccgatgacctcaaaaaagcagaatttatgcag
gataaaattggtgaagaatatactggtgttattagctcaattacgaatttcggtttgttc
gtggaactggaaaatacgattgaagggctagttcatgttagttatctaacggatgactat
tatcattatgatcagcgtagtcaagcgatgattggtgagcgaacggctaaaatgtatcgt
attggagaagaagtacaggttaaggtagtaagtgttaacattgatgaacgcaccatcgat
ttttcgatcgtgtatgatgaagaaacaaaacctaaaaaagtgattaaagcaaaaagaatg
aaaaactag
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