Virgibacillus pantothenticus: KBP50_11840
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Entry
KBP50_11840 CDS
T07430
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vpt
Virgibacillus pantothenticus
Pathway
vpt02020
Two-component system
vpt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KBP50_11840 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KBP50_11840 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpt03021
]
KBP50_11840 (rpoN)
Transcription machinery [BR:
vpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KBP50_11840 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_AraC
HTH_Tnp_ISL3
Lip_A_acyltrans
HTH_11
Sigma70_r4_2
HTH_38
MarR
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QTY14646
LinkDB
All DBs
Position
complement(2525201..2526487)
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AA seq
428 aa
AA seq
DB search
MKLQLVNEQVLQWKMNQSLMQSIQILQFSSTELVDYLKELEKENPLIEEINYDDANIPYR
SSTDNTIAPGEINANELSMYDHLKKQLYTLNIPEGMRPIVLFGIDSINESGYLDIDLLLW
AEQCQTTVEKVEQALKFIQSLEPAGIGARTLSECIVLQLNIPSEEVPFVNDLLNNHLEWV
AEEDVEAVATHYEKSPAYVKELFDQIKTCHPKPGHLLDTKIDHYIIPEASIYKENGKWHL
SFYSWSAPKLTINDDYYHMKGIGKETEKYIKEKQTQVEMVKKAIAYRSNTLERVIQCIIE
KQSLFFEHGAHMLQSLTLKDIADELELHVSTISRAIAQKYVQTPTGILPLNFFLQTGIKQ
TNGTKAAASAVKKFIVDLIDSEDKRKPFSDEKIRRLLADHYDITIARRTVMKYREQMQIP
SSTKRKER
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaagttacagcttgttaatgagcaagtgttacaatggaaaatgaatcaatccttgatg
cagtctattcaaatattgcaattttccagtactgagctagtcgattatttaaaagaacta
gaaaaagaaaacccgctcattgaagagataaactatgatgatgcgaatattccgtatcga
tcttctacggataatacaatagctccaggagaaataaatgcaaacgagttaagcatgtat
gatcatttaaagaagcagttatatacgttgaacataccagagggaatgagaccgattgtt
ttatttggtattgattccatcaatgaaagcggttacctagatattgatctgctactatgg
gctgagcagtgtcagactactgtggagaaggtggagcaagcattaaagttcatccaatct
ttggaaccagctggtataggagcaaggaccttaagtgaatgtatcgttttacaattaaat
attccgtctgaagaagttccgtttgtaaacgatttattgaacaatcatttagaatgggta
gctgaagaagatgttgaggcagtagcgacccattacgaaaaaagtcctgcatatgtgaaa
gaattgtttgaccaaattaaaacatgtcacccaaaaccgggacatttgctagatacgaaa
atagaccattatattattcccgaagcttctatttataaagagaacggaaaatggcattta
tcattttattcttggagtgcgcctaagctaacaattaacgatgattattatcatatgaag
gggatcggcaaggaaacggagaaatacattaaggaaaaacagacacaggtagaaatggtg
aaaaaagcaattgcctatcggagtaacacgttagaacgtgttatacaatgcatcattgaa
aagcaatccctgttttttgaacatggagctcatatgctgcaatcattaacattaaaagat
attgcagacgaattggaactccatgtgtcaacgataagccgcgctatcgctcaaaagtac
gtacaaactccaactggaattttaccattaaatttctttttacaaactggaattaaacaa
acaaatggtacaaaggctgctgcatctgctgttaaaaaatttatcgttgaccttatagat
agtgaagataagcgtaagcctttttctgatgaaaaaatacggagattattagcggatcat
tatgatattacaattgcaaggcgtacggtcatgaaatacagagaacaaatgcaaatacca
tcatcaacaaaaagaaaggagcgatag
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