Virgibacillus pantothenticus: KBP50_18940
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Entry
KBP50_18940 CDS
T07430
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpt
Virgibacillus pantothenticus
Pathway
vpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP50_18940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpt03019
]
KBP50_18940
03009 Ribosome biogenesis [BR:
vpt03009
]
KBP50_18940
Enzymes [BR:
vpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KBP50_18940
Messenger RNA biogenesis [BR:
vpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KBP50_18940
Ribosome biogenesis [BR:
vpt03009
]
Prokaryotic type
rRNA helicases
KBP50_18940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
ILEI
Motif
Other DBs
NCBI-ProteinID:
QTY18627
LinkDB
All DBs
Position
complement(4063870..4065294)
Genome browser
AA seq
474 aa
AA seq
DB search
MKALERMGFEEATPIQAETIPVALEGNDVIGQAQTGTGKTAAFGIPMIEKLDPKARKIQG
LVVAPTRELAIQVAEELNRLGKIKKVRAFAVYGGQHMERQIRSLKDGPQIVVATPGRLLD
HMRRKTIRTNHIQTTVLDEADEMLNMGFIDDIREILKAIPEERQTLLFSATMPKEIRDIA
TNLMNNPKEIKIKAKEMTVENIDQYFIEIPEKFKFDTLNNHLDIHSPDLAIVFSRTKKRV
DEITEGLQARGYRAEGIHGDLTQGKRMSVLNKFKNGRVDVLVATDVAARGLDISGVTHVY
NFDIPQDPESYVHRIGRTGRAGRTGEAISFITPRELAHLQLIEKVTKSKMKRLTPPTNRD
ARKGQQQVTISKIMETIESKDLNAYHQAANQLLEDHDSVSVISAALKLLTKERKDTPVKI
SSVAPVSVKKANNVKDNRRSNNKRFYGKRGQNNRGGQSGRNRKGNFQKRRNRDN
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattagaaagaatggggtttgaagaagcaacgccgattcaagccgagaccatt
ccagttgccttagaaggcaatgatgtaattggacaagcacaaacaggaacaggaaaaacg
gctgcttttggtattccaatgattgaaaagctagatccaaaagcacgtaaaattcaaggt
ctcgttgttgctccaacgagggagttagcgatccaagtagctgaagaattaaatcgactt
gggaaaataaaaaaggttcgtgcatttgcggtttatggcggacagcatatggaacgacaa
attcgttcattgaaagatggtccgcaaattgttgtagcgacaccaggaaggttattagac
catatgcgcaggaaaacaattcgcacgaatcatattcagacaaccgttttagacgaagcg
gatgaaatgttaaatatgggcttcatcgatgatatccgcgagattcttaaggcgattcca
gaagagagacagacgctgttattctcagcaacgatgcctaaggaaattcgtgatattgcc
actaatttaatgaacaatccgaaagagattaagattaaagcaaaggaaatgacggttgaa
aatattgatcaatattttattgaaataccagagaaatttaaatttgatacgttaaataac
catttggatattcattctccggatttagcaatcgtttttagccgtactaaaaagcgtgta
gatgaaatcacagaaggcttacaagctagaggttatcgagcagaaggaattcatggtgat
ttaacgcaaggaaaacggatgtcggtattgaataagtttaaaaatggccgagtggatgta
ctagttgcaacagatgttgcagcgagagggttggatatttccggagttacacatgtgtat
aattttgacatcccacaggatccggaaagctatgtgcatcggatcggaagaacaggacgt
gctggtcgtacaggggaagcaatctcctttataaccccaagggaattggctcatttacaa
ttaattgaaaaagtcacgaaaagtaagatgaaacgattaacaccacctacaaatcgtgat
gcgcgaaaagggcaacagcaagtgacgatcagcaaaattatggaaacgatcgaatcaaaa
gatttaaatgcttatcaccaagcggcaaatcaattattggaagatcatgattcggtttct
gttatttctgctgctctgaagctattgacgaaagaacggaaggatacgcctgtaaaaatt
tcttctgttgcgccagttagcgtgaaaaaagcgaataatgtaaaagacaatcgccgttcg
aataataaacgtttttatggaaaacgtggccagaacaatcgcggagggcaaagcggtcgt
aatcgaaagggcaatttccaaaaacgtagaaaccgtgataattaa
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