Vibrio pomeroyi: L0992_07265
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Entry
L0992_07265 CDS
T11873
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vpx Vibrio pomeroyi
Pathway
vpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
L0992_07265 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpx03400
]
L0992_07265 (sbcB)
Enzymes [BR:
vpx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
L0992_07265 (sbcB)
DNA repair and recombination proteins [BR:
vpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
L0992_07265 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L0992_07265 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L0992_07265 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XGB68476
LinkDB
All DBs
Position
1:complement(1611024..1612448)
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AA seq
474 aa
AA seq
DB search
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPE
AALITRITPQKAMSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHD
AMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELIDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRDRLYTKRSELNEDELPVPIKLV
QLNKCPILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSD
DVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARHFPWTLDE
AEQLKWANHCREFYESRLEEYMLNLENLAHENESDEKKMAILKAVYQYVEKLAS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagataatcagccaacctacttctttttcgattacgaaacatggggcgtgagc
ccagcgaaagatcgtccgagtcaattcgcaggtgttcgtaccgaccaagatttcaatgtt
atcggagagcctttggttatctactgccaacctcctgctgattatcttcctgcacctgaa
gctgcgctaatcactcgcatcacaccacaaaaagccatgtcgcaaggcctgcctgagcct
gagtttatcgccaagattcacgcagagctagcaaagccaaacaccacaagccttggctac
aacagcattcgattcgatgacgaagtaacgcgatacacttgttatcgcaacttcattgac
ccgtacgcatggagttggcaaaacggtaactcacgctgggatctactcgacgtgatgcgc
gccgtacacgcacttcgccctgaaggtattgtttggccagagaatgaagaaggttaccca
agcttcaaactggaacacctatctgtggcaaatggcattgaacacgaaaacgcgcacgat
gcgatggccgatgttatcgcgactatcgaattagcgaaaaagctgaaagctgcacaacct
aagatgtttgattacctctacaacatgcgccacaaacgcaagttgaacgaattaatcgac
atcgtaaacatgacacctctaatgcacgtgtcaggcatgtttggtcgtgattgcaattac
acaagctggattgttcctatggcttggcacccaaccaaccaaaacgccgttatcgtggtg
gacttagcgaaagatcctagcccactgcttgagctagataccgacgagctaagggacagg
ctctacaccaaacgaagcgagctaaatgaagatgagttgccagtgccaattaagctggta
caactcaacaagtgccctattctcgcaccagcaaaaacactcacggctgaaaacgcggaa
acgatcggtatcgaccgtcagcagtgcttaaagaaccttgcactattacgtgaacaccca
gagattcgtgaaaagctgattggcttgtactcgcaagagcgtgaatacgaaaaaagtgat
gatgtagatacacacctttacgacggtttcttctctccggcagataagaccgcgatgaac
atcattcgtgaaactgacccgaacaacttggccgctttggacatcactttcagtgacgag
cgtattaagccgctgttgttccgttaccgcgctcgtcatttcccatggacacttgatgaa
gctgagcaactgaaatgggcgaaccattgtcgtgagttttacgagagtcgcttagaagag
tacatgctgaatctagaaaacctcgcacatgaaaacgaaagtgacgagaagaaaatggcg
atcttgaaagcggtttatcaatacgtagaaaagctagctagttaa
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integrated database retrieval system
