Vibrio pomeroyi: L0992_11060
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Entry
L0992_11060 CDS
T11873
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
vpx Vibrio pomeroyi
Pathway
vpx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L0992_11060 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpx03400
]
L0992_11060 (uvrB)
DNA repair and recombination proteins [BR:
vpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L0992_11060 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L0992_11060 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
HEM4
PhageP22-tail
Motif
Other DBs
NCBI-ProteinID:
XGB66258
LinkDB
All DBs
Position
1:complement(2540554..2542584)
Genome browser
AA seq
676 aa
AA seq
DB search
MSKLFDLVSDYSTSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPA
ILLAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQ
YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLP
RFTVYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTE
LGFCSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKE
TLVEFGFRLPSALDNRPMKFDEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLL
DPIIEVRPVATQVDDLLSEIRIRSAKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNLEGKAILYGDSITKSMKKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIMEL
GDITKSKQQRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ
KRDEIEQLRKQFITNS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactctttgacttggtatcggactacagcacgtccggtgaccagccgacagcg
ataaccaaattactagacggattagattctggtttggcacatcaaactctactaggggta
acaggctcaggtaaaacctttacccttgctaacgtcatttcccaatctcaaagaccggcg
atcttgttagcgcctaataagacattggccgcgcagttgtatggggagatgaaatccttc
tttcccaacaatgccgtcgagtatttcgtttcttactacgattactaccaaccggaagct
tacgttccgacaacagacacattcatcgagaaagacgcgtctgtgaacgcccatatcgaa
caaatgaggctgtcggcaaccaaggccttgctagaacgaaaagacgccatcatcgtcgcg
tctgtatcggctatctatggtctgggtgatcctaaatcttacctgaagatgatgcttcac
ttgagtcgtggtgaggtcatggaccaacgcgatatcttgcgccgcttggctgagctgcaa
tattcaagaaacgacgttgcgttcgagcgtggccagttccgcgtccgtggtgaagtgatt
gatatcttccctgctgaatcggaccaggatgcagtgcgcatcgaaatgttcgatgacgaa
gtggattgcatcagtatctttgacccactgactggtgcggtcaagcaaagagacttaccg
cgctttactgtgtatccgaaaactcactatgtaacgccaagggagaaaatccttgaggcg
attgagaacattaaagacgaacttcgagaccgagctcaatacctcaaagacaacaacaag
cttttggaagagcagcgtatttctcagagaactcagtttgatatcgagatgatgacggag
cttggcttctgctcgggtatcgaaaactattcacggtatttgagtggtcgtgccgaagga
gaagcgcctccgacgttatttgattacttgcctgatgatggtctgttgattatcgatgaa
tcacacgtgactgtgccgcagataggcgccatgtataaaggtgaccgttcgcgtaaggaa
actctggttgagtttggcttccgtttgccttctgcattggataaccgtccaatgaagttc
gacgagtttgaatcgatcgcgccacaaacgatttttgtatcggcgacacctggtaattac
gagattgaaaaatcagatggcgagattgctgatcaagtcgttcgtcctactggcctgtta
gatccaattattgaagtaagaccggtcgcgactcaggttgatgacttgttgtctgaaatc
agaatccgttctgcgaaagaagagcgtgttttggtgaccacgttgactaagcgaatggcg
gaagacttaaccgaatacctaagcgagcatggtgttaaagtacgttacttgcactcggat
attgatacggttgagcgtgttgagatcatccgagatctgcgcctgggtgagttcgacgtg
ttagtgggcattaacttacttcgtgaaggtttggatatgcctgaagtatcgctggtggcg
attcttgatgcagataaagagggtttcctacgttctgaacgctctctgatccaaaccatt
ggtcgtgctgcacgtaaccttgaaggtaaagcgatcttgtatggtgactcgattactaag
tcgatgaaaaaagcgattgatgaaaccgaccgtcgtagagagaaacagcaggcttacaac
gaagagcagggtattacgccacaagcgcttaagcgtaatatcaaagacattatggagctg
ggtgacatcaccaagtcgaaacaacaacgacaatctaaacaagttccattgtctaaggtg
gcagagccttcagaaagttatgcggtgcttacaccacaacagcttgataaagagatcagt
aagttggaagcggcaatgtatcaacatgctcagaacttggaatttgaattggcggcacag
aagcgtgatgaaattgagcagttaagaaagcaattcattaccaatagctaa
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