Vibrio pomeroyi: L0992_15625
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Entry
L0992_15625 CDS
T11873
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vpx Vibrio pomeroyi
Pathway
vpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0992_15625 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpx03021
]
L0992_15625 (rho)
03019 Messenger RNA biogenesis [BR:
vpx03019
]
L0992_15625 (rho)
Transcription machinery [BR:
vpx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
L0992_15625 (rho)
Messenger RNA biogenesis [BR:
vpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L0992_15625 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XGB68745
LinkDB
All DBs
Position
1:complement(3516560..3517819)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVN
YDKPDNARNKILFENLTPLHANERMVMEAGNGATEDITARILDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKNDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaactgaagaacagaccagtgtctgaacttgttaaacttagcgaaagc
ctaggtcttgaaaatcaagctcgcttaagaaaacaagacattatcttctccatccttaaa
gcgcatgcaaaaagtggtgaagacatctttggtgatggtgttctagaaattcttcaagac
ggttttggtttcctgcgtagcggcgacagctcataccttgctgggccagatgatatttat
gtatcaccaagccagattcgtcgttttaaccttcgcacaggtgattctattggcggtaaa
atccgcccacctaaagatggcgagcgttactttgcactgcttaaagtaaacacggttaac
tacgacaagccagacaacgcacgtaacaaaatcctttttgaaaaccttactcctcttcat
gccaacgaacgtatggtgatggaagctggtaatggtgcgactgaagatatcacagcccga
atccttgaccttgcttcaccaattggtaaaggtcagcgtggtctgattgttgctccgcct
aaagcgggtaaaacaatgctgctgcaaaatatcgctcaaagcattgctcgcaaccatcca
gagtgtgaactaatggttctacttatcgatgagcgtccagaagaagtaacagaaatgcag
cgcctagttaaaggtgaagtaattgcatcgactttcgatgagccagcatctcgccacgta
caagtagcagaaatggtaatcgagaaggcgaagcgccttgttgaacacaagaaagacgtg
gttatcctactggactcaatcactcgtctcgctcgtgcttacaacaccgtgattccttca
tctggtaaagttcttactggtggtgttgatgcgaatgctctacatcgtccaaagcgcttc
tttggtgcggcacgtaacgtagaagaaggcggtagcttaactatcatcgcaacagcactg
gttgatactggttctaagatggatgaagttatctacgaagagttcaaaggtacaggtaac
atggaactgcaccttaaccgtaagattgcggaaaaacgcgtattcccagcgattgatttc
aaccgctctggtactcgtcgtgaagagcttcttactaagaacgatgaattacagaagatg
tggatcctgcgtaagattgttcacccaatgggcgaaatcgacgcgatggaattccttatc
gacaagctagcaatgactaaaacgaacgatgagttctttgacgcaatgcgccgtcagtaa
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