Vibrio pomeroyi: L0992_17780
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Entry
L0992_17780 CDS
T11873
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vpx Vibrio pomeroyi
Pathway
vpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0992_17780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpx03019
]
L0992_17780
Enzymes [BR:
vpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0992_17780
Messenger RNA biogenesis [BR:
vpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0992_17780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_22
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
XGB69880
LinkDB
All DBs
Position
2:complement(387949..389235)
Genome browser
AA seq
428 aa
AA seq
DB search
MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI
QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ
LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP
QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIG
RKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGKARVMVA
TDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVE
KLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERRLTMM
KRIKNRRK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcctctcaaggttttgctcctgaattagtcaaagcgttgactgagtgtggt
tatgaaaaactcactccaattcaacaaaaagcgattccaatggctcgtaaaggccatgat
atttttgctactgctcaaaccggtacgggtaaaacagcggcattctcattgcctgttatt
cagcacctactgaacagcggtaaaaaagcatctcgaggaacagctcgcggccttattctt
gctccaactcgtgagcttgctgcgcagatcgctcaaaacatcaaagactacgttaaatac
actgaactaagcgtttcagcggtttacggtggtaacaagatgtcttcacaggttcgtcaa
ttagaactgggtgtggatattttggttgcgactccaggccgtttagaagagcacttagaa
gcgggtaacgtgtctattgctaacttagaattcctagtatttgatgaagctgaccgtatc
ctagatatgggcttcatcaatgccgttcgtaagatcatgttggatgtagaaacctctcca
caaatcatgatgttctccgcgacaacatcgactcagttaaaccaactgtcagttgatatt
ttacgtaaaccaaaacgtatcagtgttgaacgtgaaaactcgacggctgcaactgtcggt
cacgtggtttacccagtggatcaagagcgtaaaacagaattgctttctgaactgattggt
cgtaaaaactggcgtcaagtgcttgtgttcgtgaactacaaagaaacagcgaacgacgtg
gttaaagagcttaagctagacggcattaaagcggtattgtgtcacggtgataaagcacaa
agtgctcgtcgtcgtgctctagacgattttaaagaaggtaaagcgcgtgtaatggtagca
acagacgttgcggctcgtggtcttgatatcgaagacttaccacacgtaattaactacgac
atgcctttcctagcagaagactatgttcaccgtattggtcgtacaggtcgtgcaggtaag
caaggtcacgctgtgtctttcgttaaccgcgaagaagagctgactgtggttcaagttgaa
aaactcattcaacagcgaattcgccgtgttgagcaaccgggttatgaaccgaagaaacgt
gatgcttacattgaaaagctgaacactaagtcggcttacaaaaaccgccaaggtcgaaaa
aacaacgcgaacgaagagcctcaagatcaagcaagcgcagaacgtcgtttgaccatgatg
aagcgaattaaaaaccgtcgtaagtaa
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