Vallitalea pronyensis: HZI73_24985
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Entry
HZI73_24985 CDS
T07178
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vpy
Vallitalea pronyensis
Brite
KEGG Orthology (KO) [BR:
vpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpy03016
]
HZI73_24985
Enzymes [BR:
vpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HZI73_24985
Transfer RNA biogenesis [BR:
vpy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HZI73_24985
Prokaryotic type
tRNA splicing ligases
HZI73_24985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
WCX
WYL
Motif
Other DBs
NCBI-ProteinID:
QUI25355
UniProt:
A0A8J8MP13
LinkDB
All DBs
Position
complement(5984394..5986688)
Genome browser
AA seq
764 aa
AA seq
DB search
MPRKKYDKPNKTIQCIRLLKILKSKKYVKKAEIAYLLGEETTRNINNYKNTLYGAGYPIG
YKSGKYGGYYLEFDAMLPSMKMNDIQLKLLGTAYEYLLKESNVPNKKTLLDYLGNAFLEN
EQTKHNEALALYGHFPLSMPSEEIERRYYIIQTAIDSKRKVKILYKGYNKDSYHIIHPYK
LFKYTNWIVFAYDESIKHMLSSFNKFKLHRMIDIELLKDGYTIDSHYKEEAFFDKEGAKE
HVTHVKLKVYGRMGRMLEEKVYGQNQVVRCLDSNMHIYLFEADMRNTLVIKKFILSFGSR
CEVIEPKELREEIIADAKKTLHYYEKYEKKLKVYLTEQSLCNNRGYNGIRKHKEGADKMI
IRGKYNEAIVYTDVIEEGAMTQIKELCDIESFSNAKIRIMPDVHAGKGCVIGFTANLGEK
VIPNIVGVDIGCGMLTVKLGKVDMALEQLDEFIHHNIPNGKAINQHKQVDFVPVLEQLKL
LKDARQDLKKWNRAIGSLGGGNHFIEVNRDEDKNKYLVIHSGSRNLGYVVANHYQKQAIG
YHSGYNDEFIKCKQALIESYKSEGRRKEIQDAIVELRTTFYKDKELPDDMCYLEGEKREE
YLHDMAICQQFAELNRQTMADKILTHMFGHCEFESFHTTHNYIDFDDNIVRKGAIKASKN
TEVLIPINMRDGSILAVGKGNDDWNDSAPHGAGRLMSRTRAFELIAFKAFKEEMAGIYST
SVTPKTIDESPMAYKSMEDIVDHIGDTVDIKGILKPIYNFKSQN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaaaaaaatatgacaaaccaaataaaaccatacaatgtataagacttctcaaa
atccttaaatctaagaaatatgttaagaaggcggagattgcatatttacttggagaagaa
acaacaagaaatataaataactataagaatactttatatggtgcaggttatccaattggt
tataaatcaggtaaatatggaggatattatctggagtttgatgccatgcttccaagcatg
aagatgaatgacatccaactaaaattacttggcacggcatatgagtacctcttaaaagaa
agcaatgtacccaataaaaaaacattacttgattatctagggaatgcatttttagaaaat
gaacagactaaacataacgaagcgttagcactctatggtcattttccattaagcatgcct
tcagaggaaattgaaagaagatattatatcatccagacggccattgattccaaaaggaaa
gtgaaaatattatacaaaggctataataaagacagttaccatattattcatccctataag
ttatttaaatataccaactggattgtttttgcttatgatgaaagcataaaacatatgctt
tcaagttttaataagtttaaattacacaggatgattgacattgaattattaaaggatggg
tatacgatagacagtcattataaagaagaagccttttttgataaagaaggagccaaagaa
catgttacccatgtcaaattaaaagtatatggaagaatgggccgtatgttagaagaaaag
gtttatgggcaaaatcaagtggttagatgccttgattccaacatgcatatctatctcttt
gaagccgatatgagaaacactctggtcataaaaaagtttattctttcctttggttcaaga
tgtgaagtcattgaaccaaaagaacttagagaagaaataatcgctgatgcaaagaaaacc
cttcactactacgaaaaatatgaaaaaaaattaaaggtttatttaactgaacaatcttta
tgtaacaataggggttataatggcatcagaaagcataaagaaggggcagataaaatgatt
attagaggaaaatataatgaagccattgtctatacagatgtgattgaagaaggtgcaatg
acccagattaaagaattatgtgatattgaatctttttctaacgctaagattcgcatcatg
ccagatgtccatgctggaaaaggatgtgtcattggtttcacagctaatctaggagaaaaa
gtgatacccaatattgttggtgtagacataggatgtggtatgttaacggtgaaattaggg
aaagttgacatggctttagagcaattagatgagtttatccatcacaacataccaaacgga
aaagccatcaatcaacataagcaagtggattttgtgccagtactggaacaattaaaacta
cttaaagatgcgcgacaggatttaaaaaaatggaatcgtgccatcggctctcttggaggc
ggcaatcatttcatagaagtgaatagggatgaggataagaacaaatatcttgtgattcat
tcaggatctagaaatctaggatatgttgttgccaaccactatcagaaacaagccattgga
taccattctggctataatgatgaattcattaaatgtaaacaagcgttgattgaatcatac
aaaagcgaaggaagaagaaaagagattcaagatgcaatcgtagaactaaggacaacgttc
tacaaagataaagaacttcctgacgacatgtgctacttagaaggtgaaaaaagagaagaa
tatctccatgatatggctatatgtcaacagtttgcagaacttaatagacagacaatggca
gataaaattttgacacatatgtttggccattgtgaatttgaaagtttccatacaacccat
aactacattgattttgacgataacattgtaagaaaaggtgcaataaaggcttcaaaaaat
acagaagtattaatacccattaatatgcgtgatggttcaatactggctgtaggtaaaggg
aatgatgactggaacgattccgctccacatggagcaggaagactaatgtcaagaaccaga
gcttttgagcttatcgcattcaaggcatttaaagaagagatggcaggtatctattccaca
tccgtcacgcccaaaaccattgatgaatcccccatggcttataaatccatggaagatatt
gtggatcatattggtgatacagttgatattaaagggatattgaaacccatttacaacttt
aagtctcaaaattaa
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