Vibrio qinghaiensis: CCZ37_00535
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Entry
CCZ37_00535 CDS
T05259
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCZ37_00535 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vqi03021
]
CCZ37_00535 (rho)
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_00535 (rho)
Transcription machinery [BR:
vqi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CCZ37_00535 (rho)
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCZ37_00535 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
S1CSD-TOTE-2
OB_RNB
AAA
DnaB_C
DUF5662
Motif
Other DBs
NCBI-ProteinID:
ASU21215
UniProt:
A0A223MUF7
LinkDB
All DBs
Position
1:111267..112526
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNTVN
HDKPDNARNKILFENLTPLHANERMIMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIANNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKPDELQKMWILRKIVHPMSESDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaacagaattgaagaacagacctgtgtctgatcttgtgaagcttggtgagagc
ctaggcctcgaaaacctggcgcgtctaagaaaacaagacatcatcttctccatcctaaaa
gcgcacgcaaaaagtggtgaagatatatttggtgatggggtcttggaaattcttcaagac
ggttttggtttcttacgtagcgccgactgttcatatttagctggccctgatgatatctac
gtatcaccaagccaaattcgccgtttcaacttgcgcaccggtgactcagtatctggcaaa
atccgcccaccaaaagaaggcgaacgttatttcgcattgttaaaagttaacaccgttaac
cacgacaaaccggataatgcacgtaacaagattttatttgagaacttaactccactacat
gccaatgaacgtatgatcatggagcgtggtaatggctcgacagaagacattacggcacga
gttctagaccttgcctctccgattggtaaaggccagcgtggtttgattgttgctccgcca
aaagcgggcaaaaccatgttgctacaaaatatcgcgcaaagtattgctaacaaccatcct
gattgtgtgttgatggtgctacttattgacgaacgtcctgaagaagtaacggaaatgcaa
cgccttgtgaaaggcgaagtggttgcttctacgttcgatgagccagcttcacgtcacgta
caagtggcagaaatggtgatcgaaaaagcaaaacgtttggttgagcataagaaagatgtg
gttatcctgcttgattccatcacacgtttagcacgcgcttacaatactgtgatcccgtca
tctggcaaagtcttgactggtggtgtggatgccaatgcattgcaacgtcctaagcgcttt
tttggtgcggctcgtaatgtagaagaaggcggtagtttaacgattattgcgacggcactg
gttgataccggctctaaaatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaattgcaccttaaccgtaaaattgcggaaaaacgtgtcttccctgctatcgacttc
aaccgcagcggtactcgtcgtgaagagttgcttactaagcctgatgagttacaaaaaatg
tggattctgcgtaagatcgttcacccaatgagtgagagtgacgcaatggaattcttaatt
gataagctcgcgatgacgaaaaccaatgatgagttttttgatgcgatgcgccgtcaataa
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