Vibrio qinghaiensis: CCZ37_01050
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Entry
CCZ37_01050 CDS
T05259
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCZ37_01050 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vqi03021
]
CCZ37_01050 (rpoC)
03400 DNA repair and recombination proteins [BR:
vqi03400
]
CCZ37_01050 (rpoC)
Enzymes [BR:
vqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCZ37_01050 (rpoC)
Transcription machinery [BR:
vqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCZ37_01050 (rpoC)
DNA repair and recombination proteins [BR:
vqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCZ37_01050 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASU21290
UniProt:
A0A223MUM8
LinkDB
All DBs
Position
1:209335..213537
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDLVAETEMMREELQTTNSETKRKKLTKRLKLVEAFISSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAQGEGMYLAGPKEAEKAYRTK
TAALHARVKVRITETVVDEDGYSTTETKMVDTTVGRAMLWQIVPKGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVVFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGVEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVSLTELAL
GRVVADDVMKPGTDEVLIPRNTLIDEKWCQIIDENSVDNMKVRSVVTCDADFGCCALCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNKGSVKL
HNAKFVINKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSVLSKGDNDTVEAGQTVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAKGKDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGIGDTLARIPQKSGGNRDITGGLPR
VADLFEARRPKEPAILAEHTGTVSFGKETKGKRRLIITREGDETYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTSYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLAGEQVEYSQVKVANRNLEAEGKQPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRAAQLKGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcacctgacatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgaacgtgatggtctgttctgtgcgcgt
atttttggtccagtcaaagactacgaatgtctttgtggtaaatataagcgtctgaaacac
cgtggcgtgatctgtgaaaaatgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcatcaccggttgctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctgctaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtatgtagtaaccgagccgggtatgacggatctagaaaagagtcagatgctt
actgaagaagagtatcttgaccgtctagaagagtggggcgatgagttcacagcgaagatg
ggcgcagaagcgatcaaagacctattgggttcaatggatcttgtcgctgaaacagagatg
atgcgtgaggagttacaaaccactaactctgaaactaaacgcaaaaaactgactaagcgt
ctgaagcttgttgaagcgttcatcagttcaggcaacaagcctgagtggatgatcctgact
gtgcttccggttcttccgccagatctacgtcctctagtaccactagatggcggtcgtttt
gcgacatctgatctgaacgatttgtaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgccttctagagctagcggctccggacatcatcgtacgcaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctacttgataacggtcgtcgcggtcgtgcgatcacaggttctaac
aagcgccctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagattactcaggccgttctgtaatcacagtaggtccatat
ctgcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagaaactcgcggcatggccacgacgatcaaagcagctaagaaaatg
gttgagcgtgaagaagcggttgtttgggatatcctagacgaagtgattcgtgaacaccca
gtactactaaaccgtgcaccaacactgcaccgtcttggtattcaagcgttcgaacctgta
ctgattgaaggtaaagcgattcaactgcacccacttgtgtgtgcggcgtataacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactttagaagcacagcttgaagct
cgtacactgatgatgtcgacgaacaacattctgtcgccagcatcaggtgatcctatcatc
gtaccttcacaggacgtggtcttgggtctgtactacatgactcgcgaaaaaatcaacgca
caaggtgaaggtatgtacctggctggccctaaagaggctgagaaggcataccgtactaag
acagcggcgctacacgcacgcgttaaagtacgtatcactgaaaccgttgttgatgaagat
ggttacagcacaactgagactaagatggtcgatacgactgtcggtcgtgccatgctatgg
caaatcgtgcctaaaggcctgccatacagcatcgtgaaccagaagcttggtaagaaacag
atctcaaatctattaaacgaagcgtatcgtaagcttggtttgaaagatacggtcgtattt
gctgaccaaatcatgtacaccggttttgcttatgcagcactgtcaggcgtgtcagttggt
atcgacgacatggttgtaccagcagcgaaatacactgaaattgctgaagcagaagaagaa
gtacgcgaaatccaagaacagttccaatcaggtcttgttacagcgggtgagcgctacaac
aaagttatcgatatctgggcgtctaccaacgaccgtgttgcgaaagcgatgatggataac
ctatcttctgaaaccgtgatcaaccgtgatggcgtagaagaacaacaagaatcgtttaac
agcatctatatgatggctgactcgggtgctcgtggttctgcggctcagattcgtcagctt
gctggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgcctatcaca
gcaaactttaaagaaggcctgaacgtactacagtactttatctctacccacggtgcacgt
aagggtctagcggatacagcattgaagacagcgaactcaggttacctgactcgtcgttta
gtcgacgttgcacaagatgttgtggtaacagaacatgactgtggcactcatgaaggtgtc
gacatgatgcctcatatcgagggtggtgatgttaaagtttctttaactgaactggctctt
ggtcgtgttgtggctgacgatgtgatgaaaccgggtactgatgaagtacttattccacgt
aatactctgattgatgagaagtggtgtcagattatcgatgagaactctgtcgataatatg
aaagtacgttcagtggtaacctgtgatgcggacttcggttgctgtgcgctatgttacggt
cgtgatcttgctcgtggtcacctagtgaaccaaggtgaggcagtcggtgttattgctgct
caatctatcggtgagccgggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcttctactgctgcggcagagaacagtatccaagcgaagaacaaaggttcggtgaaactt
cacaacgctaagttcgttatcaataaagataagaagctggttatcacatctcgtgcatca
gagctgactatcattgatgaatttggtcgcactaaagaaaaacacaaactgccttacggc
tctgtgttgagtaaaggtgataacgacacggttgaagctggtcaaacagtggctaactgg
gaagcccacactatgccaatcatcactgaagtggctggtcgcatccaattcgttgatatg
attgatggtgtaacagtttctcgccaaacagatgacctaacgggtctatcttcaagcgaa
gtaaccgaagccgccgctcgtccagcagcaggtaaagatatgcgcccagctatcaaactt
gttgatgcgaaaggtaaagatgtcatgatccctggcactgatatgccagctcaatacttc
ttaccgggtaaagcgatcgttaacatcgaagatggtgctgaagttggtattggtgacaca
ttagcgcgtattccacaaaaatctggcggtaaccgagacatcacgggtggtctacctcgc
gtagctgacttgtttgaagctcgtcgaccaaaagagcctgcgattcttgctgagcacaca
ggtactgtgagctttggtaaagaaactaaaggtaaacgtcgtctaatcatcactcgtgag
ggtgacgaaacttatgaagaaatgattcctaagcatcgtcaacttaacgtgtttgaaggt
gagaagatcgaacgtggtgacgttattgctgatggtcctgagactccgcacgatatccta
cgtttacgtggtatccatgctgtaacgtcttacatcgctaacgaagtgcaagaagtttac
cgtctgcaaggtgttaagattaacgataagcacattgaaactatcgttcgtcaaatgctg
cgtaagtgtacgatcactcatgctggtgactctgagttcctagcgggtgagcaagttgaa
tactcacaagtgaaagttgcaaaccgtaacctagaagcggaaggcaaacagcctgctcgt
ttcgagcgtgagctactcggtattactaaagcatctctagcgactgaatctttcatctct
gcggcatcgttccaagagacaactcgcgtactaacagaagcggctgtttctggtaaacgt
gatgatcttcgcggtctgaaagaaaacgtaatcgttggtcgtctgattccagcgggtaca
ggtttcgcttaccaccaagagcgtcaagctaaacgtgcggcacagctaaaaggcccgtct
gctgaacaagcgacagataacctagcggcactgctaaacgcaggtttctcttctgaagag
taa
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integrated database retrieval system
