KEGG   Vibrio qinghaiensis: CCZ37_01180
Entry
CCZ37_01180       CDS       T05259                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
vqi  Vibrio qinghaiensis
Pathway
vqi02024  Quorum sensing
vqi03018  RNA degradation
vqi05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vqi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCZ37_01180
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CCZ37_01180
   05111 Biofilm formation - Vibrio cholerae
    CCZ37_01180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vqi03019]
    CCZ37_01180
   03036 Chromosome and associated proteins [BR:vqi03036]
    CCZ37_01180
Messenger RNA biogenesis [BR:vqi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CCZ37_01180
Chromosome and associated proteins [BR:vqi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CCZ37_01180
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ASU21307
UniProt: A0A223MVF5
LinkDB
Position
1:236026..236292
AA seq 88 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARAVSHHTAEPRTGSDRPSDKSEE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccattcttaaatgcactacgtcgtgagcgcatt
ccagtatccatctaccttgtgaacggaattaagcttcaaggtcagattgaatcctttgat
caatttgtgatcttactgaaaaacacagtcaatcaaatggtgtataagcatgcgatttca
acggttgttcctgcacgtgcagtgagccaccacactgctgagccacgcaccgggtctgat
cgtccatcagacaaatcagaagagtaa

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