Vibrio qinghaiensis: CCZ37_01480
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Entry
CCZ37_01480 CDS
T05259
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vqi
Vibrio qinghaiensis
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_01480
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCZ37_01480
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Hrs_helical
Motif
Other DBs
NCBI-ProteinID:
ASU21351
UniProt:
A0A223MUX0
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All DBs
Position
1:295810..297819
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AA seq
669 aa
AA seq
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MKRNSAFMRYTPTLKLSTRLVAFVTLIVTSAMFILFVGGTLSFQRLGQEYLNHYLAGIVE
VVDKEIEDPDAAYSLQRWMPKMLQASSIVEMQLSSPAGVIYRFKDTSSKVDPARLYHIDI
ILERNPDYIISFEAIPPYLSYNYSFGAMWSITLAVGLIVFCLIRGVKWLKEQLLGSELLE
ERGRMILAGRVEQYAKGDHREWPYTASEALDVLIDELQDARQERSRFDTFIRTQTFLDKL
TGTANRVLFDSKLESALLENGARGGVLLVRIDDWDSLCEENDKKAADDLVVEVGENISNV
IQRYPDVILSRYYDTDFAIFVPHQGVKEVASIATQCLKLLARISPPEPLDKENWCHIGIS
MYSEGERRGRVLDEAETALKSAQLQRVNTWSRFKKSTFFQEERGSVRWRTLFDQVLTPEK
IILFRQPCYLLEKTNDLVWLHDELFARIDDPEQGVIKTSRFHSALETVGYEMVMDRAVLL
KVVRLLKSSEVKANVSVNLHVIPFADKQYFKWFRHELLQLTSSSRSQLSFEFPEGRLVQH
LDYMRPVIKMISGLGAKVVVGQAGRTIVSTHYIKDLKIDFLKLHRSLMKKIDQRHENQLF
VRSMLGACGGTQTQVIAVGVETEQEWQTLKNLGIHGGQGRLFEEEQPLLPEKIISPSVTL
GRRNRWRKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaggaattcagcattcatgcggtatacaccaacactgaaactgagtactcggtta
gtggcttttgttacgctcatcgtaaccagtgcaatgttcattttgtttgttggtggaact
ttgtcttttcaacggcttggacaagaatatctcaatcactacctagcaggaattgtggag
gtggtcgataaagaaatagaagatcctgatgctgcttactcattgcaacgttggatgcca
aaaatgttgcaagccagtagcattgttgaaatgcagctctcttcacccgctggcgtcatt
taccgttttaaagatacctcatccaaagtcgaccccgcccgtttgtaccatatcgatatt
atccttgaacgtaatcctgactacatcattagttttgaagccattcctccctatctcagt
tataactattcgtttggcgctatgtggtccatcacattagccgttggtttgatcgtgttt
tgtttgattcgtggagtaaagtggcttaaagagcaattgctgggatctgaattgttggag
gagcgagggcgaatgattctcgccggtcgagttgagcaatatgccaaaggtgatcaccgc
gagtggccttatacggcgagtgaggcgctcgatgtcctgattgatgagctacaagatgct
cgtcaagagcgcagccgctttgatactttcatccggacccaaaccttcttagataaattg
acgggtacggccaaccgtgtccttttcgatagcaaattggaatcagccttgttagaaaat
ggcgcgcgtggtggcgttttgctagtgcgtatcgatgattgggattctctgtgcgaagaa
aatgataaaaaagcggctgatgatctcgtcgtggaagtcggtgagaacatctccaacgtc
atacagcgttacccagatgtgattttatcgcgttattacgataccgattttgccattttt
gtgccacatcaaggggtgaaagaggttgcttctattgccacacaatgcttgaagctttta
gcgcgcatatcgcctcctgagccgctcgataaagaaaactggtgccatataggtatcagt
atgtacagcgaaggcgagcggcgtggccgagtgttggatgaggcagaaacggcactaaaa
agtgctcagttacagcgagtgaatacatggagccgctttaaaaagagtacttttttccaa
gaggagcggggcagtgtgcgttggcgaactttgtttgatcaggtgctgacgcctgagaaa
ataattttattccgtcaaccttgctatttgcttgaaaagacgaatgatttagtatggttg
catgatgagttgtttgcgcgtattgatgatccagaacaaggtgttataaaaacctctcgc
tttcattctgccttagaaacggttggttatgaaatggtgatggatcgagccgtattgctt
aaagtcgttcgtttgcttaaaagctctgaagttaaggccaatgtgtcagtgaacttgcat
gtgattccattcgccgataagcagtattttaagtggttccggcatgaattgctgcaactg
acctcgagtagtagatcgcagctctcctttgagtttcctgaaggtcggttagtacagcat
ctcgattatatgcgccccgttattaagatgatctccggacttggtgctaaggtagtagta
gggcaagcaggaagaaccattgtcagcactcactatatcaaagaccttaagattgatttc
ctgaaattgcaccgcagcttgatgaagaaaatcgatcaacggcatgagaatcaactgttt
gttcgtagcatgcttggtgcttgtggcggtactcagactcaagttatcgcggtcggtgtc
gaaacagagcaagagtggcaaacgctaaaaaacctaggcattcatggtgggcaaggccga
ctgtttgaagaagaacagcctttgttacctgagaaaataattagccctagcgtgacctta
gggcgaagaaatcgttggcgtaaaaaataa
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