Vibrio qinghaiensis: CCZ37_02930
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Entry
CCZ37_02930 CDS
T05259
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
CCZ37_02930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vqi03000
]
CCZ37_02930
Transcription factors [BR:
vqi03000
]
Prokaryotic type
Helix-turn-helix
Other families
CCZ37_02930
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA
AAA_22
AAA_16
HTH_29
AAA_13
HTH_22
HTH_7
AAA_5
AAA_14
HTH_17
HTH_IclR
AAA_2
HTH_50
HTH_Tnp_1_2
NB-ARC
HTH_30
Arf
Motif
Other DBs
NCBI-ProteinID:
ASU21609
UniProt:
A0A223MVM1
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Position
1:603410..604744
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AA seq
444 aa
AA seq
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MGTQFRMDSVPGSLVVVGGTYEPWLSVLEQVGWRCTQCADLRKADALFAETGPCIGIVDL
SHDEFSLNGIANLVSNHKQVRWLAFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHYGATGDMGLIGESTPMKRLRDQIKRIGPTDVSILIYGENGTGK
ETVARAVHKTSSRAQKPFISVNCRALSESRFECELFGIGCEDSSQTSLLERADGGTILLK
DILTLPKSQQANLLRFLQEGTIETSMGVKEVDVRILAANSSDIEKALIDGNFNEELYHYI
NVLRINVPSLKERAGDIALLARHFLQEYSKEFNAQARSFTEEATRSLTRYHWPGNVRELM
NQIKRVVLMSDSVMLDELQLDLPKRSDGKRSLKSIRERSERDALLLVLESNSGQVSMAAK
ELGVSRATMYRLLNKHNLITENTY
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggcactcaattccgaatggattctgtcccaggttcgcttgtcgtcgttggtgggaca
tacgagccttggttatctgtacttgaacaggttggttggcgttgtacacaatgcgcagat
ttacgtaaagcggatgccttgtttgcagaaacaggcccatgcattggtattgttgatttg
agccatgatgaattcagcctcaatggcattgcaaatttggtcagcaaccataaacaagta
cgttggttagcgttcattcgcgaatcacagttgagctcggatacaatttgccaattcatt
gttaacttttgtatcgacttttttacggcgccgattcccgatgcgcagctactgagcacc
attggacaccaacttggaatgcttaagttagagaaaaaagtatggccacattatggagca
acaggggatatgggtttaattggtgaatccactcccatgaagcgcctgcgtgatcagatc
aagcgcatcggccctacggatgtcagtatcctcatttatggggaaaatggaacgggcaaa
gagacggtcgctagagcggtacacaaaacctcatctcgtgcacaaaaaccttttatttca
gtgaattgccgagctttatcggagagccgctttgaatgtgagctgtttggtattggttgt
gaagactcatctcaaacttcattattggagcgggcagatggtgggacgatcctactcaaa
gatattctcacgctacctaaaagccaacaagctaacctcttgcgctttttgcaagaagga
acgatagaaacttcaatgggtgtcaaagaggtggatgtgcgtattttggccgccaactct
tccgatattgaaaaagcgctgattgatggcaattttaacgaagagctgtaccactacatt
aacgtattgcgtattaatgtcccgagcttaaaagagcgagctggcgatatagcattatta
gcgcgtcacttcttgcaggaatattctaaagagtttaacgcgcaggcgcgcagttttact
gaagaagcgacacgctcattgactcgttatcactggccgggtaatgttcgtgagctgatg
aatcagatcaaacgagtggtgctgatgtccgattcagtcatgttggatgaattgcaactc
gacttaccaaaacgcagtgatggtaagcgcagcctaaaaagcattcgtgagcgttcagag
cgagatgcgctattactggttttagaatcgaactcagggcaagtatcaatggccgccaaa
gagctaggtgtatctagagctactatgtatcgcttgcttaataaacataacttaatcact
gaaaatacctattaa
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