Vibrio qinghaiensis: CCZ37_05865
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Entry
CCZ37_05865 CDS
T05259
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCZ37_05865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_05865
Enzymes [BR:
vqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCZ37_05865
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCZ37_05865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
SNF2-rel_dom
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASU22145
UniProt:
A0A223MX23
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All DBs
Position
1:complement(1271109..1272395)
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AA seq
428 aa
AA seq
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MSFSSQGFAPELVKALTECGYEKLTPIQRQAIPEARKGHDIFATAQTGTGKTAAFALPVI
QHLLDSGKQPSPKTARGLILAPTRELVAQIAQNIKDYVKYTKLSVAAVYGGNKMSSQVRQ
LEMGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSP
QIMMFSATTSTQLNQLAGDILRKPKRINADRANTTAATVAHVVYPVDQERKTELLSELIG
RKNWQQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKVRVMVA
TDVAARGLDIVDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTVVQVE
NLIQQRIRRVEQPGYEPKQRDAYIEKLHTKAAYKDRQGRRNNPNDEKPDQASAERRLNMM
NRLKNRKK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcatctcaaggttttgcacctgaacttgttaaagcgcttactgaatgcggc
tatgaaaaacttacccccattcagcgacaagccattcccgaggctcgtaaagggcatgat
atttttgcaacggcgcaaactggcacaggcaaaaccgcagcattcgcactgcccgttatt
caacatctgttagatagcggcaagcaaccttcgcctaaaacagcgcgaggcttaattttg
gcacccacgcgtgaattagtggcgcaaattgcccagaacattaaagactacgtcaagtac
accaaactcagtgtcgctgctgtttacggtggaaataaaatgtcttctcaagttcgtcag
cttgaaatgggtgtggacattttggtcgcgacccctggccgattagaagagcatttaagt
gaaggtaatgtttcactcgccaaccttgagtttttggttttcgacgaagcagatcgaatt
ttagatatggggttcatcaatcccgtgcgtaaaatcatgctggaagtggaaacctcacca
caaatcatgatgttctcggccactacatccactcagcttaaccaactggcaggcgatatt
ttacgcaaacccaaacgcattaatgccgatcgtgctaataccacggccgcaacagtggcg
catgtggtttaccctgtcgatcaagagcgtaaaacggaactgctgtctgaactgattggc
cgcaaaaattggcaacaagtcttagtgtttgtgaactataaagagacggctaatgaagtg
gttaaagagctgaaactggatggcatcaaggccgtgctatgtcatggcgataaagcacaa
agtgcacgtcgacgcgctcttgaagaatttaaagaaggcaaagtgcgtgtcatggttgcg
accgatgtggctgcacgtggtttagatatcgtcgacctgccacacgtggttaactatgac
atgccatttctcgccgaagattatgtacaccgcataggtcgtactggtcgtgctggcaaa
cagggacatgctgtctcatttgtcagccgcgaagaagagttgactgttgttcaggttgaa
aaccttatccagcaacgcatccgccgtgttgaacagcctggttatgagcctaaacagcgt
gatgcctacattgaaaagcttcacacaaaagcggcgtacaaagatcgccaaggccgtcgt
aacaacccaaatgacgaaaagccggatcaagcctcagcagaacgtcgtttgaacatgatg
aatcgactaaaaaatcgtaagaagtaa
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