Vibrio qinghaiensis: CCZ37_06665
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Entry
CCZ37_06665 CDS
T05259
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vqi
Vibrio qinghaiensis
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_06665
Enzymes [BR:
vqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCZ37_06665
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCZ37_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
ABC_tran
AAA_23
NACHT
AAA_30
TsaE
OPA3
SLFN-g3_helicase
NTPase_1
PhoH
Zeta_toxin
LYTB
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ASU22288
UniProt:
A0A223MXJ9
LinkDB
All DBs
Position
1:complement(1446484..1450419)
Genome browser
AA seq
1311 aa
AA seq
DB search
MTSSQPNQHKSMNASSNSAASLRNALKECMMRDRFRLSKRISGASKIKNEQAKHAVFDQI
ALDIAQSMMVAQQRLNNRVTIDYPDLLPVSQKRDDIAKAIAENQVVIVAGETGSGKTTQL
PKICAELGRGKYGLIGHTQPRRLAARSVASRIAQEMETELGGFVGYKVRFNDQISEQTQI
KLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA
TIDPERFSNHFSGAPIIEVSGRTYPVDTRYRPLLGEEDEDRDQLEGIFEAVDELCAEGLG
DILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHIGRRIVLATNVA
ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICIRL
YSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEE
LGAIVPDTNKHGHDSKKQLTDMGRKLARLPIDPRLARMVLEAPKLGCVKELMVIAAALSI
QDPRERPSDKQQASDEKHRRFFDEESDFLSLVNLWNHIQTEQKALNSSQFRKQCKQDYLN
YLRVREWQDVYFQIHQSMREMDYKLNDEPGNYQSIHSAILVGLLSHIGIKDQEKNEYQGA
RNARFNIFPASGLFKKQPKWVMVAELVETSKLWGRIAAKIQPEWVEPLAQHLIKRSYSEP
HWSKKQAAVMAYEKVMLYGIPIVPKRLINYSTIDEPLCREIFIRSALVEGDWETKHAFFK
QNRRLLLEVEELEHKSRRRDILIDDEQLFEFYDQRVATDVVSGRHFDAWWRKASKATPDL
LNFEKEMLFKGDASHITDLDYPNFWHQNGIKLKLSYQFEPGVDSDGVTVHLPLPILNQIE
PTGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPMELPLLDAMEKEL
RRMTGVEVKREDWKLEQVPDHLKITFRAVDHKNRKLNEHKDLYQLKESLKEKVQETLSQV
ADDDIEQQGLHTWSFGELPKVYQQKRGGFEVKAYPALVDSKESVEIKLFETEQEQLNAMK
AGQRRLILLNVPSPIKYLHTNLPNKSKLGLYFNPYGKVLDLIDDCIACGIDKLIEQQGGL
VWEPEQFEALKEFVRAELGDTVVDIAQQVETILTTAFNINKKLKGKIDFTMAFALSDIKA
QIEGLIFKGFATECGWKRLPDILRYMRAIERRMEKLPIDPNKDRLHMLKIEAVTNDYKAL
LNKIPRGAEVPENVKEIRWMIEELRVSLFAQQLGTPYPVSDKRIKNAIDAC
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcgtcacagcccaatcaacacaagtcaatgaacgctagcagcaacagtgcggca
tctctgcgcaatgcattgaaagaatgcatgatgcgtgatcgttttcgtctgagtaaacgc
atctctggtgcgagcaaaataaaaaatgagcaagccaaacatgccgtttttgatcaaatt
gcgctcgatattgctcagtcaatgatggtggcgcagcagcgtctcaacaaccgcgttacc
atcgactaccctgatttattgcccgtaagccaaaaacgcgatgatatcgccaaagcgatt
gctgaaaaccaagtggtgattgtggcgggtgaaacagggtcaggcaaaacgactcagtta
cccaaaatttgcgcagaacttgggcgcggtaaatatggcctgattggccatactcagcca
cgtcgccttgctgcgcgttcggtcgcgagccgaatagcgcaagagatggaaacagaactg
ggtggctttgttggctataaagttcgttttaacgatcaaatttccgagcagactcagatc
aaattgatgactgacgggatattgttggccgaaatacagcatgatcgctttctcaatcag
tacgacaccatcattatcgatgaagcgcatgagcgcagcttaaatatcgattttatctta
ggttatttgaaagaactgctgccgcgtcgtccggatctcaaagtcatcattacttcggcc
accatcgatcctgaacgcttttctaaccattttagtggcgcgcccatcattgaagtgtcg
ggtcgtacttatccggtcgatacgcgttatcgaccactgcttggtgaagaggatgaggac
cgcgatcagctggaaggtatttttgaagccgtcgatgagctttgcgctgaagggcttggc
gatattctgatcttcatgaatggcgagcgagaaattcgtgatacggccgatgcgctcagt
aaacgtaatttgcgtgatactgaaattgtgccgctttatgcacgattatccgccggtgag
cagaataaaatctttcagccccatatagggcggcgcattgttttagccaccaacgtggca
gaaacatcccttaccgtgccggggattaaatatgtcattgaccctggtacggcgcgtatc
agccgttatagctaccgcaccaaagtccaacgtttgccgattgaaccaatttctcaagcg
agtgcaaatcagcgtaaaggacgttgtggccgtgttgaagaagggatctgcatacgcctc
tattccgaagaggattttctttcacgcccagaatttaccgatccggaaatactgcgtacc
aacttagcctcggttattttacaaatgaccgcacttgggctgggtgatattgaagcattc
ccatttgtggaagcgccggataaacgcaacattcaagatggtgtgcgtttgcttgaagag
cttggcgcgattgttcctgataccaataaacacggtcacgacagcaaaaagcagttgacg
gatatggggcgcaaattagcacgcttgccgattgatccccgtttggcgcgtatggtgctc
gaagcgccaaagcttggctgcgtaaaagagctaatggtgattgccgctgcactttcgatt
caagacccgcgtgaacgtccatcagataaacagcaagcctccgatgagaaacatcgccga
ttttttgatgaagagtccgattttctgagcctagtgaatctgtggaaccacattcaaact
gagcaaaaagcgttaaacagcagccaatttcgtaagcagtgtaaacaagattacctcaat
tatttgcgggtacgtgaatggcaggatgtctacttccaaattcaccaatcgatgcgtgaa
atggattacaaattgaacgacgaaccgggcaattaccaaagtatccacagtgcaattttg
gttggcttactgtcgcacatcggtatcaaagaccaagagaaaaatgaataccaaggggct
cgtaacgctcgctttaatatcttccccgcttctggcctgtttaaaaagcaacccaagtgg
gtgatggtcgctgaattggtggaaacctctaaactgtgggggcgtattgcagctaaaatc
cagcctgaatgggtggaaccgctggcgcagcatttgatcaagcgtagctacagcgaaccg
cattggtcaaaaaaacaagccgccgtcatggcctatgaaaaagtgatgttatatggcatt
cctattgtgcctaaacgtttgattaactacagcaccattgacgagccactatgtcgtgag
attttcattcgcagcgcattagttgaaggtgattgggaaaccaaacatgcgtttttcaag
caaaaccgtcgcttattacttgaagtcgaggagcttgagcataagtctcgccgccgcgat
attttgattgatgatgaacagcttttcgagttctatgatcagcgagtcgcaacggatgtg
gtctctgggcgtcattttgatgcgtggtggcgaaaagccagcaaagccactccagatcta
ctcaactttgaaaaagagatgctatttaaaggtgatgctagccacatcactgatttagat
tatcccaacttttggcaccaaaacggtattaaactgaagctcagctatcaatttgaacct
ggagtggatagtgacggtgtcacggtacatttgccactgccgattctcaatcaaattgag
ccgacagggtttgattggcagatccccggattacgtcatgaattggttgtcagcctgatc
aagtcgttgcctaaaacactgcgcaaaaactttgtaccggcacctaactatgcagatgcg
tttttagctcgtgtcacaccgatggaattgcctttattggatgcgatggaaaaagagtta
aggcgcatgacgggcgtcgaggtgaagcgtgaagattggaagttagagcaagttccggat
catttaaaaatcacttttcgcgcggtggatcataaaaatcgcaaactcaacgagcataaa
gatttatatcagttgaaagagagtttgaaagagaaagtacaagaaacactctctcaagtg
gcagacgatgatattgaacagcaaggtttgcatacgtggagctttggtgaattaccaaaa
gtttaccaacaaaagcgcggcggtttcgaggttaaagcgtatccagcgttagtggatagc
aaagagagcgttgaaattaagctttttgagaccgagcaagaacaacttaatgcaatgaaa
gcagggcaaaggcgtctgattttgctgaacgttccttcaccgattaaatatctgcacacc
aatttaccgaacaagtcaaaattggggctctactttaacccgtatggcaaagtgcttgat
ctgattgatgactgtattgcttgtgggattgataagttaattgaacagcaaggcggttta
gtgtgggagccggagcagtttgaggcactgaaagagtttgtgcgcgctgaattgggcgat
actgtggtcgatatcgcccaacaagtggagacgattcttaccacggcattcaacattaat
aaaaagctgaaagggaaaatcgattttacgatggcctttgcgttatcggatatcaaagcg
cagatcgaaggtttgatctttaaaggctttgccaccgaatgcggttggaagcgtttgccg
gatattctgcgttacatgcgtgcgattgaacgtcggatggagaagttacccattgatcca
aataaggatcgtttgcacatgttgaaaattgaagcggtaaccaatgattacaaagcgcta
ctaaacaagatacctcgtggtgcagaagtacctgaaaatgttaaagagatccgttggatg
attgaagagcttcgggtgagtttatttgctcagcaacttggcactccttatccagtttca
gataaacgtataaaaaatgcgattgatgcttgttag
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