Vibrio qinghaiensis: CCZ37_08110
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Entry
CCZ37_08110 CDS
T05259
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCZ37_08110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_08110
Enzymes [BR:
vqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCZ37_08110
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCZ37_08110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NACHT
PhoH
AAA_22
Flavi_DEAD
Cas3-like_C_2
SF0329
UvrD-helicase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ASU22561
UniProt:
A0A223MYB9
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All DBs
Position
1:1776809..1778047
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AA seq
412 aa
AA seq
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MPFSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPIL
QMLSQGTTQRAKRVRALILAPTRELALQVEENITQYAKYLPLTSLAMYGGVDSQKQKQRL
IEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRMLDMGFIEDINKIVDRLPLNRQ
NLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWIITVDKDQKSALLSHLITE
NQWQQAMIFIETKHGAAKLASQLEKRGIAAEAFHSGRSQEVREKLLADFKAGKLQFLIAT
GVAARGIDIDNLERVVNYDLPYPAENYIHRIGRTGRAGATGEAISLVSRDDFKNLCMIES
RLGHLLVRKEIEGFTPKKDVPISILNYHLKKRDNEHSSAPRRSPRPKQEKRS
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgccattttccaacctaggattgagcgatccaatcttaaaagccgttcacgaactcggc
tattctgccccaacaccaattcaagaacaggcaatccctgccattttgacgggtaaaaat
gtcattgcggcagcgcaaaccggcacgggtaaaaccgctagctttgtactgcccattttg
cagatgcttagtcaaggaacaactcagcgcgccaaacgtgttcgcgcattaattttagcg
cccacgcgcgaattggctctgcaagtagaagagaacatcacgcaatacgcaaaatatttg
cccttaacctcgcttgcaatgtatggcggtgtcgattcacaaaagcaaaaacaacgcttg
attgaaggggtggatattttgatcgccacgccggggcgcttgcttgatatgtatggccaa
cgcgccgttcattttgatgagcttgaagtgttggtgatggatgaagctgaccgcatgctc
gacatgggtttcattgaagacatcaacaaaattgttgatcgcctgccactaaatcgtcag
aacttgctgttttcggcgaccctttctcgtccagtgcgcgagttggccaaatcagccatt
aatgatccgattgaaattgatgtcgctggttacaaccgcacgccaaatcaaattgagcag
tggattatcactgtcgataaagatcaaaaatctgcactactgagccatttgattactgaa
aaccaatggcaacaagcgatgattttcatcgaaaccaaacacggtgcggcaaagctagca
agccaactggaaaagcgtggcattgcggcagaggcatttcacagtggtcgtagccaagaa
gttcgtgaaaaattattagctgatttcaaagcaggtaaactgcaatttttgattgcaacg
ggcgttgctgcgcgcggtattgatattgataacttagaaagagtggtgaattacgacttg
ccttatcctgcggagaactacattcaccgtattggacgaaccggtcgtgctggtgcaacc
ggcgaagcaatttctctcgtatcacgcgatgattttaaaaacttgtgcatgattgaaagc
cgcttaggacatttgcttgtgcgtaaagagattgaaggtttcacaccgaaaaaagacgtg
cctatttccattttaaattaccacttgaaaaagcgtgataacgagcactcaagtgcaccg
cgtcgtagccctcgtcctaaacaagaaaaacgctcataa
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