Vibrio qinghaiensis: CCZ37_13660
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Entry
CCZ37_13660 CDS
T05259
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCZ37_13660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_13660
Enzymes [BR:
vqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCZ37_13660
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCZ37_13660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASU23643
UniProt:
A0A223N1Q4
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All DBs
Position
2:63535..64761
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AA seq
408 aa
AA seq
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MNFSKLNLSVPLMAALPASRHTATKIQQLAIPAVLSGQDVLAFAQTGSGKTLAYGLPLLQ
QIEINTLEIQLVVIVPTRELAQQVSQELSAVASKMGISLCTLCGGVAQEEQLAQLAKLPH
LIVATPGRLLDLLIQQLISLESMHCVVLDEADRLLEMGFWPDVQRLLSFMPQTKQTLLFS
ATLAADLEQMALAVLSNPVKIEANQANQVVEEIEEQLYLVNKGSKAQALIALIKQRAGQQ
VLVFISARDSADAVAKKLLKAGIRAAALHGEKDQVIREQTLADFKANQVDVLVATDLLAR
GIHIDALPVVINFDLPPSAPVYIHRVGRTARAGQGGVAISLVCHGESQALEAIRSLTQRA
LPLQALSDFPVTDQPTSGEPKRKPRDKQANRRSAQKRSVKQFQQKTSH
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttctaagcttaacttaagcgtccctttgatggctgcgctgcctgcgtcgcga
cacacggcgaccaaaatccaacaattggctattccagccgtactttctgggcaagatgtg
cttgccttcgcgcagacgggcagtggtaaaacgttagcttatggcttgcctttactgcaa
caaattgaaattaatactcttgaaattcaattggttgttattgttcctacccgtgaatta
gcacaacaagtcagccaagagctgagtgctgtggcaagcaaaatgggcattagcttatgc
actttatgcgggggagtggcccaagaagagcagcttgcgcagttggccaaattaccgcat
ttaatcgtcgcgacaccgggccgcttgcttgatttactcatacagcaactgatctcattg
gagtcgatgcactgtgtggtgttagatgaagctgaccgactgttagagatggggttttgg
ccggatgtacaacgcctgctcagttttatgccccaaaccaaacaaacgttgctgttttcc
gccacactcgccgccgatctcgaacagatggcattggccgtgttaagtaacccggtaaag
atagaggcgaatcaagccaatcaagtggtggaagaaattgaagagcagctctacctcgtg
aataagggcagtaaagcacaagcattaattgctctgattaagcagcgggctgggcagcaa
gtattagtgttcattagcgctcgtgatagtgctgacgcggtcgcgaaaaaattactcaaa
gcgggtattcgtgcggcggctttgcatggtgaaaaagatcaagtcattcgcgagcaaacg
ttagccgatttcaaagcgaatcaagtggatgtactggtggccaccgatttactggcgcgt
ggtattcacattgacgcgctgccagtggtgatcaattttgatttaccgcctagtgcgcca
gtttatattcaccgcgttggccgcacagcgcgtgctggtcaaggtggtgtggcgatttcg
ctggtctgccatggtgaaagccaagcgctggaggctatccgcagcttaacgcagcgcgct
ttaccgctgcaggcattgagcgattttccagtgacagaccaaccgaccagcggtgaaccg
aagcgcaaaccgcgcgataagcaagctaaccgccgcagtgctcaaaaacgcagcgtgaag
cagtttcaacagaaaacaagccattaa
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