Vibrio qinghaiensis: CCZ37_17525
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Entry
CCZ37_17525 CDS
T05259
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCZ37_17525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vqi03019
]
CCZ37_17525
03009 Ribosome biogenesis [BR:
vqi03009
]
CCZ37_17525
Enzymes [BR:
vqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCZ37_17525
Messenger RNA biogenesis [BR:
vqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCZ37_17525
Ribosome biogenesis [BR:
vqi03009
]
Prokaryotic type
rRNA helicases
CCZ37_17525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
WYL
Flavi_DEAD
PTP-NADK
Motif
Other DBs
NCBI-ProteinID:
ASU24249
UniProt:
A0A223N3B1
LinkDB
All DBs
Position
2:complement(827406..829418)
Genome browser
AA seq
670 aa
AA seq
DB search
MQDSVIQFSELALNESILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQHKPQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPGT
AQRVLFSATMPPMVKTIVDRYLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSQMEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATT
LAAILLKRQQGNRPLFYVGPDPMVDAIEREKSRRRDRKEGSERGERREGGRDSRDGREGR
REYGTASNDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKS
MSSDVEGKLRKLRIRQKEVGAVVCDFDDFRESRGRREGGNGGGARREGGNGGFRNREGGA
PAAGAGRGGREGGFRGNRDGAAATGRDGERRFDRNRGGDHRGNFRGERGHGNANANANAG
TLSRPRRAEA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcaagactctgtaattcaatttagtgaattagccctaaacgaatcaatcctttctgct
ctaaatgaaatgggtttcgtttctccaactcctatccaagctgctgctattccatttctt
cttgaaggaagagatgcgctaggtaaagcacaaacaggtacaggcaaaacggctgcgttt
tctctacctctactgaataaattaaacctttctcaacacaaaccacaagcgatcgtgatg
gcaccaactcgtgaacttgctatccaagttgcggcagaaatcaaaaaccttggccaaaag
attcaaggccttaaagtacttgagatctatggcggtgcttctattgttgaccaaatgcgc
gctttgaaaaatggtgctcatattgtggttggcacacctggtcgtgtaaaagacttgatc
actcgtgatcgccttcatttagacgaatgtcataccttcgttcttgatgaagcggatgaa
atgctcaaaatgggcttcgttgatgacgtaacttggatcatggaacaagcacctggcacc
gctcaacgcgtgctgttctctgcgactatgcctcctatggtgaagacgattgttgaccgt
tacctacgtgatccagctcgtgttgacgtagcaggttcaaaccaaactgttgcgaaagta
gagcagcaatattgggttgttaaaggtgttgaaaaagatgaagcgatggctcgtcttctt
gaaacagaagaaaccgatgcgtcaatcgtctttgtacgtactcgtcaagacaccgagcgt
ttagctgattggttattatctcgtggctttaaagcggcagcacttcatggtgatattccg
caatcactgcgtgagcgcacggttgatcatatcaaacagggtgtaatcgacattcttgtt
gcgacagacgttgttgctcgtggtcttgatgttccacgtattacacacgtgttcaactat
gatatcccattcgatgtagaatcatacatccaccgtattggccgtactggccgcgctgga
cgcaaaggtaaagcgatccttctagttcgcacgaaccaaattcgtatgttgcgtacgatt
gagcgtgtaactcgttctcaaatggaagagattcaacttccaatgcgtgacaaagttgct
gaagctcgcctcatcaaactgggtgcagagctagaagctgacaaaggtcatactgcttta
gacaaatttgttgagctcattgaaaaacttcaacaaagcctagagattgatgccacaaca
ctggcggccattttactgaagcgccaacaaggcaatcgtccactcttctatgtcggccca
gatccaatggtcgacgcgatcgagcgtgaaaaatcacgtcgccgtgatcgtaaagagggt
agtgagcgtggtgaacgccgtgaaggcggtcgcgatagccgtgatggacgcgaaggtcgc
cgcgagtatggtactgcgagcaatgactgggatacttatcagttacaagtcggccgtgag
caaggcgtgcaagtgaaagacatcgttggtgctttagctaatgaacttggtttaaccaaa
ggttcaattggtgcaattaaacttgctcaaggccatacattcgtacagcttcctaaatca
atgtcttcagatgttgaaggcaaattgcgtaaactgcgtattcgccaaaaagaagtcggt
gccgttgtatgtgactttgatgacttccgcgagtctcgtggtcgtcgtgaaggtggtaac
ggtggtggtgcccgccgtgaaggcggaaacggtggcttccgtaatcgtgaaggcggtgct
cctgctgctggtgcaggtcgtggtggccgtgaaggtggcttccgtggcaaccgtgacggt
gcagcggcgactggtcgtgatggtgagcgtcgttttgaccgcaaccgtggtggcgatcat
cgtggtaacttccgtggtgaacgtggtcacggtaatgctaatgctaatgctaatgcgggt
acgctaagccgtcctcgtcgcgctgaagcataa
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