Vigna radiata (mung bean): 106757735
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Entry
106757735 CDS
T04126
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106757735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vra03021
]
106757735
03019 Messenger RNA biogenesis [BR:
vra03019
]
106757735
Transcription machinery [BR:
vra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106757735
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106757735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-met
Zf-C2H2_ZNF451_2nd
Pcf11_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
106757735
NCBI-ProteinID:
XP_014495989
UniProt:
A0A1S3TQF1
LinkDB
All DBs
Position
3:5760079..5766218
Genome browser
AA seq
1022 aa
AA seq
DB search
MNMESTRRSLDRSRELGSKKPRLIEELSARQLPQRQQGSGIVTSLVSARARVNDRDTESS
ESSRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCA
NILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFG
TWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQ
QSSTSKGVVDDMTGTLLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPE
KSIDGSFGGSQYGSGISSNLVSGAARTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSL
KRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLNDHGPN
VSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKH
HTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGET
ESPSGQSASQRQSPSLPGTVYHPDSMQNLPEQEMPQDLKTSQFLGGPTSQHIRDRSPTLH
PVVQVGNMRRTQEKDMQGTFQTKLQPQQLNSSQAEVFAKTKLPQSKVSLTKGVSEQSTKN
NLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVISPSLLDP
LHKDSSSLPKKPQGKAGQPPQRLSTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAET
ESPTVVPSEVLKGSKDKTVNISTSSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQS
TSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKICGIRFKQEQQYKRHLEWHATR
EHGPIKESRSWYAKSSDWIAGKVEYSSELEFTDHSVVVHDKETDSSQLDTMIRADENQCL
CVLCGELFEDVYCHERNEWMFKGAVYMNCSDFNDEMESRNVGPIIHAKCLSENSIVTNLG
ND
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgaatatggagagtacgcgcagatcgttggatagatctagagaactgggttccaagaag
cctcgattgatcgaagaactaagcgcccgacagttacctcaaagacagcaagggtcgggg
atagttacttccttggtgtctgcaagggctcgagtaaatgacagggacaccgaaagcagc
gaatcaagccgcggcggtgggtaccagcctcagccacagcctcaccatgagcttgtgact
cagtataagactgcgcttgctgaacttactttcaattctaagccaataattacaaacttg
actattattgctggggagaatcagtctgctgccaaggcaattgccgccactgtttgtgct
aacattctagaggttccaagtgatcaaaaactgccgtctctctatctcttagacagtatt
gttaagaacatcgggcgagattatataaagtattttgctgtcagattacccgaggtattc
tgcaaggcttacagacaggttgatcctattgtccattcaagtatgaaacatctttttgga
acttggaaaggagtctttcctcctcagtgtcttcagatgattgagaaagaacttggcttt
acacctgcagtcaatggttcagcttcagtatctgctacagtcaggagtgatttgcagtca
caacgcccacctcatagtatccatgtgaatccaaagtatttagaaaggcagcgtctccag
cagtcaagtacgagtaaaggagttgttgatgacatgactggaactttgttaaagtcgaat
gaggattcagagaggccaaatagagctttgggtgcttctcgaccatggctggatcctagg
attaacatgcttaataatcagcacacacagagagatgcatttaatgattctgttcctgag
aagagcattgatggatcatttggaggcagtcaatatggttctggcatttctagtaatttg
gtctcgggtgctgcaaggactggaactaagctcattgatttagggcaagaaaaaacatgg
tccaaaacagacggtggtgatgcagagaccatatctgggcaaaaaaatggtttcagtctc
aagcgtagtctttcaaatcgggaagcaccaaagtccataaatttgaaagcacatcgtcag
ccgggcttaaatttaactcagatatggaacaatatgatgtcagataactggaaaaattct
gaagaggaggagttcacgtgggatgagatgaactctggtttgaacgatcatggacctaat
gtgtctagcaatttgagcacagattcatggatgacagatgatgaaaatttggaaggtgaa
gatcacctgcatattctacacccttacggggaaaaggttgatagggaaatatccactgtt
aagaaacaactgcctggttttggtggccatccaccttcatcatggcaattgcagaagcat
cacacaattgataagttgacactgaagccaggttactcagaaggatttgtgtccactatt
agtggcttaccagccaacgcaagttctttacctgtcaagaaggggaaccaatctctgacg
tcaaaggcaatagtaggaatgtccaaaattgtagagcaacaatttgattctggggagacc
gaatccccttctgggcagtcagcttcacaacgacagtctccatcactaccaggaacagta
taccaccctgattcaatgcaaaatttgcctgagcaagaaatgccccaggatctcaaaaca
tctcaatttttaggaggtccaactagtcagcacattagagatcgctcacctacccttcat
cccgtcgttcaggttggtaacatgcgaagaacacaggaaaaggacatgcagggcacgttt
caaacaaagcttcagccacaacagctcaactcttctcaggctgaagtttttgctaaaact
aagttgccccagtctaaagtttctttaaccaaaggagtttcagaacagtcgaccaaaaat
aatttgtcagctgcagctgtgaagagtggaatcattcccaagaaatcaattaccagtaat
ctggatccaaggaagcatctatccaagtctggggttcagcttcctccttccggtaggtct
tctcctgccacattaatttcttcagggtctgcagtgatatcaccatctttattggatcct
ctgcacaaagattcatcttcactgcccaaaaaacctcaaggaaaggctggacaaccacca
caaaggctttctactcaaccacctgcttcctctaatgtgaatgccgcaaaaaataatgta
aaccctatcgcaaaccttttaagctcattggttgcaaagggtttgatatccgcagaaact
gaatcaccgactgtggtaccaagcgaggtgctgaagggatccaaagataaaactgtaaac
attagcaccagtagctctttcccagttacatcagtttctgattctgcagctgtcccagca
tcatctgccagagacgaggaagacgcttctacaaaatcctctctaccctcagctcaatca
actagcacgaaaatcagaaatctcattggctttgattttaaacctaatgtaattcgagaa
ttccatgaaccggtaattagggaattattggatgatttccctcatcattgcaaaatttgc
ggtattaggtttaaacaagaacaacagtataagagacacttggagtggcatgccacaaga
gaacatggtccaattaaagaatccagaagttggtatgctaagtcaagtgattggattgct
ggcaaggtagaatactcatctgagcttgagtttaccgaccactccgttgttgtacacgac
aaagaaacagacagcagtcaattggatacgatgattcgagcagatgaaaatcagtgtttg
tgtgtattgtgtggcgagctatttgaagatgtgtactgtcacgaaaggaacgagtggatg
ttcaaaggggccgtttacatgaactgctcggatttcaatgatgagatggaaagtagaaat
gtgggtcccatcattcatgcaaaatgcttatcagagaactcaattgtcaccaatttgggt
aatgattaa
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