Vigna radiata (mung bean): 106757778
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Entry
106757778 CDS
T04126
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106757778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vra03041
]
106757778
03009 Ribosome biogenesis [BR:
vra03009
]
106757778
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106757778
Spliceosome [BR:
vra03041
]
Complex A
U2 snRNP components
U2 related factors
106757778
Complex B
106757778
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106757778
Ribosome biogenesis [BR:
vra03009
]
Eukaryotic type
90S particles
Helicases
106757778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
FtsK_SpoIIIE
T2SSE
AAA_30
AAA_7
Flavi_DEAD
AAA_33
NACHT
AAA_29
PhoH
Motif
Other DBs
NCBI-GeneID:
106757778
NCBI-ProteinID:
XP_014496053
UniProt:
A0A1S3TQK4
LinkDB
All DBs
Position
3:8069312..8073620
Genome browser
AA seq
724 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSLAKKAKSNGGANNSVANALINRWNARPYSQRYFDILEKRKTL
PVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERY
KVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPG
RLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISN
LGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGIPGRKIVVSTNIAETSLTIDGIV
YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLK
QCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLEKLYKKREKEKEET
RSRR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaagaggaaggtgagcttgttcgacgtggtagatgattctctagcg
aagaaggcgaaatcaaatggcggcgccaataacagcgttgccaatgctctcatcaatcgc
tggaacgcaaggccttactctcagaggtacttcgatattttggagaagagaaaaaccctc
cctgtttggcaccagaaagaagagttcttacaagttcttaaagataaccagactttgatt
cttgtcggtgaaactggtagtggcaaaaccactcagattcctcagtttgttttggatgct
gtcgagttagagacaccagacaaacgtaggaagatgatgattgcctgcactcagcctcgg
agagtggctgcgatgtctgtttcgcgtcgtgtggctgaagagatggatgtaaccataggg
gaagaggttggttacagtatcagatttgaagactgcagtagtgcgaggacagttttgaag
tatctaaccgatggtatgctcttaagggaagcaatgacagatccgcttctggagcggtac
aaggttattattctagatgaggctcacgaaaggactttggccactgatgtgttatttggc
cttctgaaagaagtgcttaaaaatagacctgacttgaagttggttgttatgagtgctact
cttgaagctgaaaaatttcagggctatttttttggtgcccctctcatgaaagttcctgga
aggctacaccctgttgaaattttctacacacaggaacctgaaagggattacttggaggct
ggcattaggacagtggtacaaatacacatgtgtgaaccacctggagatatacttgtattt
ctgactggagaggaagagatagaagatgcttgccgcaaaataacaaaagaaatttctaat
ctgggagatcaggtgggccctgtgaaagtggtacccctgtattctacccttcctccagct
atgcaacagaagatttttgagccaccgccacctccactgaaggagggtggaattcctgga
aggaagattgtggtctcaacaaacatagcagaaacttcgttgacaattgatggtattgtt
tatgtcattgaccctggctttgctaagcagaaggtttataatccacgagttcgtgtggag
tctttattagtatcaccaatatcgaaagctagtgcacatcagaggtctgggcgtgccgga
agaactcaaccagggaaatgctttagactttatacagagagaagttttaataatgatctt
cagccacagacctatccagaaattttaagatcaaatcttgccaatacagttcttactttg
aagaaactgggcatagatgatttagtgcattttgatttcatggacccgcctgctcctgag
acattaatgcgtgcattggaagtgttgaattacttgggtgcactggatgatgatggtaac
ttaactaagctgggtgagattatgagtgaatttcccttggatccacagatgtcgaagatg
cttgttgtcagtcctgaattcaactgttcaaatgagattctgtcaatttctgccatgctg
tcagtacccaattgctttgtccggcctagggaggctcaaaaagctgcggatgaagctaaa
gctaggtttgggcacattgatggagatcatctcacgctgttgaatgtctatcacgcatac
aagcaaaataatgaggatccctcttggtgctatgataactttgttaatcatagggcattg
aaatcagctgataatgttagacaacagttagtgcgtatcatggcccggtttaatctgaag
caatgcagcactgactttaatagccgcgactactatgtcaacataagaaaagctatgcta
gctgggtatttcatgcaggtagctcatttggagcgtacaggacactacttgacggtgaaa
gacaaccaggtggtgcatttgcatccatcaaattgcctggaccacaagcctgaatgggta
atttataacgaatatgttcttaccagtcggaattttattcgtactgttacagacatacga
ggggaatggttggttgatgtagcaccacattactatgatttgtctaatttcccccaatgt
gaggcaaagcgtgttctagagaaactttacaagaagcgagaaaaggagaaggaggaaacc
cggagtcgcagataa
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