Vigna radiata (mung bean): 106759196
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Entry
106759196 CDS
T04126
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106759196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106759196
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106759196
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106759196
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
106759196
NCBI-ProteinID:
XP_014497726
UniProt:
A0A1S3TVC0
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All DBs
Position
4:5364127..5373779
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AA seq
671 aa
AA seq
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MSSLLNSSLNGSASNLPDGAAGRSFATSFSGQSGVASPVFHHSGSIQGLHNIHGSYNVPN
MPSSLTSRNSTLNSLPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRG
GISVIGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNM
VGGGNIGRISSGGLSVPGLASRINLGGNAGSGGLGVQGQNRLISTVLPQGSPQVISMLGN
SYPSAGGPLSQSHVQTVNNLNSMVMLNDVNSGDSSPFDINDFPQLTTHPSSAGGPQGQLG
SLRKQGIGVSPIVQQNQEFSIQKEDFPALPGFKDYKNESLISLGGNADFAMDMYQKEQLH
DNTVSMMQSQHFSQMGRSSGFSLGGSYPSHRTQQHTPSVSSNGVSFSSVNSQDLHLHGTD
MFPSSHSTYHSQTSGPPGIGLRPLNSPNTGMGSYDQLIQQYQQQQNQSQFRLQQMSAANQ
SLRDQGMKSMQSAQSSPDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYK
TFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYA
ANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYE
LVEKRPSLPQR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcttacttaattcttccctgaacggatctgcttcaaatcttccagatggtgct
gctggacgttcctttgctacgtctttttctggtcagtctggtgtagcctcgccagttttt
catcactctggttctattcagggattgcacaacattcatgggagctataatgtacccaat
atgcctagttcacttacatcaagaaactcaacgttaaatagtttaccaactgggggagga
gttcaacaaccttcagcaagcctttcaagtggacgatttgcatcaaataatctacccgtt
gctctgtcacagctatctcatggaagttcccatggacattcaggagtcaacagtagagga
ggtataagtgttataggaaatcctggatttaatagtagcacaaatggagttgctggtcct
attcctgggattcttccaacttctgctgcaattggtaaccgaaatgctgttccaggattg
ggagtatccccaattttgggaaatgcaggtcctcgaatcactagttcgatgggaaacatg
gttggtggggggaacattgggaggataagctctggaggattgtctgttcctggcctcgct
tctcgtataaatttaggtggaaatgctggatctggtggtttaggtgtgcaaggacagaat
cgattgataagtactgttcttccacaaggatctccacaggtaatttcaatgctaggaaat
tcctatcctagtgctggaggtccactttctcaaagtcatgttcaaacagtaaataacttg
aactctatggtgatgctgaatgatgtgaattccggtgacagttcaccatttgatatcaat
gacttccctcaactgaccactcatcctagttctgctggtgggcctcaaggacagttgggt
tctttacgaaaacagggtattggagttagtcccattgtccaacaaaaccaagagtttagt
attcaaaaggaagacttcccagctttaccaggattcaaagattacaagaacgaaagcctt
atttcactaggtggtaatgccgattttgctatggatatgtaccagaaagaacaacttcat
gataacaccgtgtcaatgatgcaatctcagcatttctctcagatggggcgatcttctggt
ttcagtttggggggatcatatccatcacatcgcacacagcagcataccccttcagtcagt
agtaacggtgtctccttttcatctgtaaacagtcaagacctccatttgcatggaacagat
atgtttccttcttcacattcaacttatcattcccagaccagtggacctcctggcattgga
ctaaggcctttaaattctccaaatacgggtatgggttcatatgaccagcttattcagcag
tatcaacagcagcagaaccagtcgcaattccgccttcagcaaatgtcagctgcaaatcag
tctcttagggatcagggcatgaagtccatgcaaagtgcgcaatctagtccagatccattt
ggtgcccttggcttgttcagtgtagtccatataagtgatcctgacctgaaatatcttgct
catgggattgatctgacaacgcttgggttgaatttgaattcatcagaaaatctttacaag
acttttcgatcaccatggtctgatgaaccggccaagggtgatccagagttcagtgtgcta
caatgttattatgctaaacagccgcctgctctacatcaaggttattttttgaagttttcg
gtggaaactttgttttacatattttacagcatgcccaaggatgaagcacaactatatgca
gcaaatgaactttacaaacgaggttggttttatcataaagaacaccgtttttggtttata
agagttgccaacatggagccgcttgtcaaaacaaatacatacgagagaggatcttaccat
tgttttgatccaaatacctttgaaacagtccggaaggataattttgttcttcattatgaa
ttggtggaaaagcgaccgtctttacctcaacgttaa
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