Vigna radiata (mung bean): 106764841
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Entry
106764841 CDS
T04126
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03008
Ribosome biogenesis in eukaryotes
vra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106764841
09123 Folding, sorting and degradation
03018 RNA degradation
106764841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vra03021
]
106764841
03019 Messenger RNA biogenesis [BR:
vra03019
]
106764841
03009 Ribosome biogenesis [BR:
vra03009
]
106764841
03016 Transfer RNA biogenesis [BR:
vra03016
]
106764841
Transcription machinery [BR:
vra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106764841
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106764841
Ribosome biogenesis [BR:
vra03009
]
Eukaryotic type
Pre-60S particles
RNases
106764841
Transfer RNA biogenesis [BR:
vra03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106764841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
106764841
NCBI-ProteinID:
XP_014504741
UniProt:
A0A1S3UFE8
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All DBs
Position
6:complement(36991948..37005826)
Genome browser
AA seq
1079 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVIVDAIEEEPVVIDGIQIPVDTSKENPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEARLREEFEKEGRKLPPKAESQTFDSNVITPGTEFMAVLSIALQYYVHL
RLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLNGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQDKCFLCGQMGHLAANCEGKEKRKAGEFDEKGEAIVAKKPY
QFLNIWTLREYLEYEMRIPNPPFEFDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAIN
LLIAVYKKEFRELGGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKRE
KAQAKRGDDTEPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHYNSQVSSSIKKHNKET
AERPHKVARLSSGAALATAIVEAESRVEIEAQDNKDELKTKLKEILREKADVFNSKNAEE
DKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFY
PYHYAPFASDLKDLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTEPNSPI
IDFYPVDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEVEKIENFLTPEEKRRNAIMYDLLF
VNSCHPLSACISTLDNKCKNMSNNERALVKEKINPIESGGMNGYLSLCGGEPCPPIFRSP
VASMEDIMDNQVICAIYRLPDAHKHISRPPQGVKFPIKSVTVGDIQPDRGLWHEDSGRRH
HTENGRRNPPGSSGRELGEPAHRLIMNSLQAKVDSNGYRHPHNGPPISYPAPMGHRPPVS
SYGYESHPGYVAMPPVPSPSLHGRPHFTPYNAVPTAQQYGYNQQYLPPPVAYNPHQPSNS
YERNDYQHPAGSHHYERNQIQGTGGSLRHGYQSSGYNQNARFMNNTQGGYASHHHDVSHH
HQVIHHSQNFQPSRTHQNWTPRNNQSGNREYGHHSSNQFSLLDRRGNRNPMPPPGYDRQ
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagccttctaccggtggctggccgagaagtatccgatggtgattgtggac
gcgatcgaagaggaaccagtcgtcatcgacggcattcaaatcccggtcgatacgagcaag
gagaaccctaacaacatcgaatacgataacctctacctcgacatgaatggcatcattcat
ccctgctttcaccccgaggataggccttctccgacgtcgttcgatgaggtgtttgagtgc
atgtttgactacattgacaggctgttcgttatggtgcggccgcggaagctcctctacatg
gctattgatggtgttgcgccgagggcgaaaatgaaccagcaacggtctaggcggtttagg
gctgcgaaagatgcagctgacgcggctgctgaagaagcaaggttaagggaggaatttgag
aaggagggcagaaagcttcctcctaaagctgagtcacagacgtttgattcaaatgtcatt
acacctggaactgaatttatggctgttttgtcaattgcacttcagtactatgttcatctt
aggttgaacaacgaccctggttggcaaaatattaaggttattctttctgatgcaaatgtt
cctggtgaaggggagcataagattatgtcctatatccgcctgcagagaaatcttaatggt
tttgatccaaatacacgacattgcctatatggtttggatgccgatttgattatgttggca
ttggctacccatgaagttcatttttcaattcttagagaggttgtatttactcctggacaa
gacaaatgcttcctctgtggtcagatgggccatttggcagcaaactgtgaaggaaaggaa
aaaagaaaggcaggagagtttgatgaaaaaggagaggctattgtggctaaaaagccatac
cagttcctgaatatttggactctaagagaatacctagagtatgagatgagaatacctaat
cctcctttcgagtttgattttgaatgcattgtggatgattttatcttcatgtgctttttc
gtcggcaatgattttcttccacatatgcctacactagagattcgtgagggtgcaatcaac
ttgctgatagctgtatacaagaaagaatttagggaattgggtggttatttaaccaatggt
agcacgataaacttgagcagggtggagcacttcattcaggctgttggatcttatgaagat
aaaatattccagaaaagagctcgattgcatcagcggcaaacggaaagaataaagcgtgag
aaggcacaggcaaaaaggggagatgataccgagcctcaatttcaaccagagtctttagtt
gcagtttcacgatttcatggttctcgtcttgcttcagctccaacaccatcaccatttcag
caatctgggcattataactctcaagtgtcctcatcaattaaaaaacacaataaagaaacc
gctgagaggccacataaagtggctaggttatcttcgggagccgctcttgccactgctatt
gttgaagccgagagtagagttgaaatagaagctcaagataataaagatgaattgaaaaca
aaattgaaggagatacttcgtgagaaagcggatgtattcaactcaaagaatgctgaagag
gacaagattaagttgggagaaccaggctggaaagagaggtattatgaggaaaaattttct
gctaaaactcctgaggaacttgaagcgatacggaaagatgttgtcttgaagtacactgaa
ggcctatgttgggtgatgcactattattacgaaggtgtttgttcttggaactggttttat
ccatatcactatgccccctttgcgtctgatctcaaggaccttggtgaacttgatattagt
tttaagctgggtaccccattcaaaccatttgaccagcttctaggggtctttcctgctgca
agttctcatgctcttcctgagccgtataggagacttatgactgaaccaaactcacctatc
attgatttttatcctgttgattttgaagttgacatgaatggaaaacgctttgcttggcag
ggtattgctaagttaccttttattgatgaagggcgtcttctcgcagaagttgagaagatt
gaaaattttttaacgccagaggaaaagcgacggaatgctataatgtatgatttgctcttt
gtgaattcttgtcaccctctctctgcatgcataagtacactggacaacaagtgtaaaaac
atgtcaaacaacgaacgggctttggtgaaggaaaaaatcaatcccatagaaagtggtgga
atgaatggttacttatctctatgcggtggagaaccttgccctcctatctttaggtctcct
gttgcaagcatggaagatatcatggacaatcaagttatatgcgcaatatatagacttcca
gatgctcataaacacatttcccgaccaccacaaggagttaaatttcctattaagtctgtt
accgttggggatatacagcctgaccgtggtttatggcatgaggattcaggtaggagacat
cacactgaaaatgggaggagaaaccctccaggatcttctggccgggagcttggagagcct
gcacacagactcattatgaattccttacaggccaaggttgactccaatggctaccgtcac
ccacataatggaccacctatatcttatcctgcaccaatgggtcatcgaccaccggtatct
tcctatggttatgaatcacacccaggatacgttgcaatgccccctgttccttctccctca
ctccatggcagaccccactttacaccttacaatgctgtccctactgctcagcagtatggc
tataatcaacaatacctaccaccccccgtagcatacaatcctcatcagccatcaaattct
tacgaaagaaatgactatcaacaccctgctggatcacatcattatgaaagaaatcagatt
cagggtactggtggtagtttaaggcatggatatcaatcgtcaggatataatcagaacgcc
aggtttatgaacaatacgcaaggtggatatgctagtcaccatcatgatgttagtcatcat
caccaagttattcaccacagccaaaacttccaaccatctagaacccatcagaattggact
cctcgaaacaatcagagtggaaacagggaatacggtcatcattcgtccaatcaattttct
ttattagatagaagaggaaacaggaatccaatgccaccacctgggtacgatcgccaatag
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