Vigna radiata (mung bean): 106764938
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Entry
106764938 CDS
T04126
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106764938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106764938
03012 Translation factors [BR:
vra03012
]
106764938
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106764938
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106764938
Translation factors [BR:
vra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106764938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
OB_NTP_bind
Helicase_C
R3H
HA2_C
Ank_2
HA2_N
nSTAND3
ATPase
AAA_19
AAA_22
Rad17
Ank_3
ABC_tran
AAA_7
AAA_23
Ank_5
AAA_25
PhoH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
106764938
NCBI-ProteinID:
XP_014504871
UniProt:
A0A1S3UFT1
LinkDB
All DBs
Position
6:complement(2445458..2455747)
Genome browser
AA seq
1155 aa
AA seq
DB search
MTKNRVRKGKRERKGRYNLKIDEVTRIRITQILEQFRASEDEVYEFDAGLSNAERALVHQ
MSQKMGFRSKSYGLGKDRKVFVKKIRIESDTVNGFENIPRFTFSEEAKWVLGDLFAHYPP
GDGDLWDMVGENSDSTVDKPKQNQDDFFRRPSMSKTEIASRLEALSSRINKVSNLKQIIE
DRSKLPIASFKDVITSTVESHQVVLICGETGCGKTTQVPQFILDHMWGKGEVCKIVCTQP
RRISAISVSERISTERGETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRVLVSKGYHSS
KIGHMKDDVSEITHIIMDEIHERDRYSDFMLAIIRDMLPSYPQLRLILMSATIDAARFSQ
YFGGCPIISVPGFTHPVKAFYLEDVLSIVNSKKDNHLDSTTCSTSINTRELSEEEKLSMD
EAINLAWSNDEWDMLLELVSSEGTPELFNYQHSLTGITPLMVFAGKGRVGDMCMLLSCGA
DCHLKAQDGMTALEIAERQNQPEAAEILKKHLRNDFSNSTVENMLLDKYLSKVNPELVDV
VLIEQLIRKICIDSTDGGILVFLPGWDEINKTREKLFASSFFKNSSRFMLISLHSMVPSM
EQKKVFRHPPHGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVSTLQSSWI
SKASAKQREGRAGRCQPGICYHLYSRTRAASLPDFQIPEIRRMPIEELCLQVKLLDPNCK
VEEFLGKTLDPPVFESIRNAIIILQEIGAFSSDEKLTKLGEKIGSLPVHPSICRMLFFAI
LMNCLEPALTLACASEYRDPFTLPMLPGEKSRAAAAKSELASLYGGCGDQFAVLAAFECW
NNSKKMGLEGRFCSRYFVSSSAMNMLSGMRRQLQAELIRNGFIHEDVSSYSVNAHDPGVL
HAVLVAGLYPMVGRFIPNKIGKRFIVETAGGDKVRLHNHSTNFKLSFRKHLDDTLIVYNE
ITRSDVGMSIRNCTVVGQLPLLLLSTEIAVAPTDENDDDEDDAEGSEDEVGSEDGMELDA
KSSGDHEDKLMSSPDNRVKVIMDRWLYFRSTAIDVAQLYCLRERISAALLYKVTYPRSDL
PPIMAASLDAIACILSCDGCIGVPAFSEGVDKLTTMVNATTLGRSGSRRFGKRPKGSLEE
LINHDGHQNSGPSKA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaacagagtgagaaaaggaaagagagagaggaaaggacgctataacctcaaa
attgatgaagtcaccaggattcgcattacccagattctagaacagttccgagcctctgaa
gatgaagtgtacgagtttgatgctggtttgtccaacgcagagcgtgctttggtgcatcaa
atgtcccagaaaatggggtttagatctaaaagttatgggcttgggaaggacaggaaagtg
ttcgttaaaaaaattagaatagagtctgacacggttaatgggtttgaaaatattcctcgt
ttcacattttctgaagaggcgaagtgggtgctgggtgatttatttgctcattatcctcct
ggtgatggagacttgtgggatatggttggagaaaatagtgacagtactgttgacaaaccg
aaacagaatcaggatgattttttccgcaggccctcgatgagcaaaactgaaattgctagt
agattggaagctctctcttctagaattaacaaagtctctaacttgaaacagatcattgaa
gatagatctaagcttccaattgcatctttcaaggatgtaataacatcaactgttgaatct
caccaggtagttctcatatgtggtgaaactggttgtggaaagactacgcaggttccacag
tttattttggatcatatgtggggtaagggagaggtatgtaaaatagtttgtactcagcct
cggcggatctctgcaatttcagtttctgagagaatctccactgagagaggagagactatt
ggagaaaatgtgggatataagatacggttagaaagcagagggggaaggcaatcatcaatt
gtgctatgtaccactggagtgctactaagggtgttggtttccaaaggttaccattcgtct
aagatagggcacatgaaggatgacgtttctgaaatcactcacataattatggatgaaatt
catgaaagggatcgatactctgacttcatgttggcaatcatcagagacatgctcccttca
tatcctcaactacgtctgatattaatgagtgccaccattgatgctgcgagattttctcaa
tactttgggggctgcccaatcatcagtgttccaggattcactcatccggtcaaagctttc
tatttggaggatgtactttctattgtaaattctaagaaagataatcatcttgatagtacc
acatgtagtacttcaataaacaccagggagctaagtgaagaagagaagctttctatggat
gaagctattaatttggcttggtctaatgatgaatgggacatgttgttagagttggtttct
tctgaaggaacaccagaactctttaattaccaacattctttaactggcattactccacta
atggtgtttgctgggaagggtagagtgggagatatgtgcatgctcttatcttgtggagca
gattgccatttaaaggcccaggatggaatgactgcactggagattgctgaaaggcaaaac
caaccagaagcagctgaaatattgaagaagcacttacgcaatgatttttccaactccaca
gtagagaatatgctacttgataaatacctgtcaaaagtcaacccagaacttgttgatgtt
gtgttgatagagcagctgataagaaaaatatgcattgattcaacagatggagggatcctt
gtttttcttccaggctgggatgaaataaataaaacacgtgagaaattgtttgcatcatct
tttttcaagaattcctcaaggtttatgctcatatctctacattcaatggttccaagcatg
gaacaaaagaaggtttttaggcacccacctcatgggtgccgcaaaattgtactatcaaca
aatattgccgaaacagctatcaccattgatgatatagtgtatgtcatagacactggacga
atgaaggaaaaaagttatgatccttataacaatgtgtcaactcttcagtcatcttggatt
tcaaaagcaagtgcaaagcagcgagagggacgtgctggccgctgtcaacctggaatatgc
tatcatctatactcaaggactcgggcagcttccttaccagattttcagattccagaaatt
agaagaatgcctattgaggagctttgtctacaggtgaagttgctagatccaaattgcaaa
gtggaagaatttctgggcaagacgctagatcctccagtttttgagtccatacgcaacgca
attataattcttcaagagattggggcattttcaagtgatgaaaaactcaccaaactaggg
gagaagattggttctcttcctgttcacccatcaatctgcaggatgcttttttttgctata
ttgatgaactgccttgagccagctttaactcttgcctgtgcatccgagtatagagatccg
tttacactcccaatgttacctggagagaaaagtagagccgcagctgccaaatctgagctt
gcttctttatatgggggttgcggtgatcagtttgctgtattggctgcattcgaatgctgg
aataactcaaagaaaatgggtctagaaggacggttttgctctcggtattttgtgtcatca
agtgccatgaacatgttatctggcatgcgcaggcaacttcaagcggaactaattcgaaat
ggttttatccatgaagatgtttcaagttacagtgtgaatgcacatgaccctggtgtactc
catgctgttttggtagcaggactatatccaatggttgggagatttattccaaataaaatt
gggaaaagatttatagttgaaacagcaggtggtgataaagttcggttgcacaatcattct
acaaatttcaagttgtcattccggaaacatttagatgacactttaattgtgtataatgag
attactcgtagtgacgtgggtatgagcataaggaactgcacagttgttggacaacttcca
cttttgctgctttcgacagagattgctgttgctccaactgatgaaaatgacgacgacgag
gatgatgcagaaggaagtgaagatgaagtgggaagtgaagatgggatggaacttgatgct
aaatctagtggagaccatgaggataagttgatgtcttctcctgataacagggttaaagta
atcatggaccgttggctttattttcgttcaacagcaatcgatgttgctcagctatactgc
ttgagagagagaatatcagcagcacttttatacaaagtgacatatccaaggagtgatctt
cctccaatcatggcggcttctctggatgctatagcttgtattttgtcttgtgatgggtgc
attggtgtgccagcattttcagaaggtgtggacaaactaaccactatggtaaatgccaca
actttaggcaggtcaggatctaggcgatttggaaagagaccaaaaggatcacttgaagag
cttattaatcatgatggtcaccaaaactctgggccttctaaagcctag
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