Vigna radiata (mung bean): 106765306
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Entry
106765306 CDS
T04126
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03013
Nucleocytoplasmic transport
vra03015
mRNA surveillance pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106765306
09122 Translation
03013 Nucleocytoplasmic transport
106765306
03015 mRNA surveillance pathway
106765306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106765306
03041 Spliceosome [BR:
vra03041
]
106765306
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106765306
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106765306
Spliceosome [BR:
vra03041
]
Complex C
Other components
EJC/TREX
106765306
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106765306
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ribosomal_L26
Motif
Other DBs
NCBI-GeneID:
106765306
NCBI-ProteinID:
XP_014505368
UniProt:
A0A1S3UH65
LinkDB
All DBs
Position
6:complement(30936525..30943621)
Genome browser
AA seq
426 aa
AA seq
DB search
MGDTKNEAYEEDLLDYEDEEEKEPEGANKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLA
RDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRA
AELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDT
ASYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggggatacgaagaacgaggcgtacgaggaggaccttcttgactatgaagacgaagaa
gagaaggagcctgaaggtgctaataaagtcaacggtgaagcgggcaagaagggttatgtt
ggaattcacagttcaggattcagagactttttactgaagccagagcttcttcgggctata
gtggactctggatttgagcacccttctgaagtgcaacatgagtgcatacctcaagctata
cttggaatggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtatttgtt
ctatctaccctgcagcagattgaccctgttgccggccaagtttctgcacttgtcttatgt
catacaagggaattagcataccagatatgcaacgaatttgaaaggtttagcacctaccta
cctgatctaaaggttgctgtgttttatggtggtgtgaacataaaagttcacaaggatcta
ttgaagaacgaatgccctagtattgttgttggtacacctggaagaatacttggattggct
agggataaggacctttctttgaagaatgttagacatttcattttagatgaatgtgataag
atgctagaatctctggacatgaggaaagatgtgcaagctattttcaagatgacaccccat
gataagcaagttatgatgttttctgcaactctcagcaaggaaatacgtcctgtctgcaaa
aaatttatgcaagatccaatggaaatttatgttgatgatgaagcaaagttgacccttcac
ggacttgtgcagcactacatcaaattgaaagaggaggagaagaacaggaagttgaacgac
cttcttgatgcattggacttcaatcaaattgttatctttgtgaaaagtgttagtagagca
gcggagctggacaaattgcttagagaatgcaacttcccatctatttgcattcattctgga
atgtctcaggaagaaaggttaaagcgatataaaggttttaaggagggtcatacaagaatt
ctagttgcaacagatttggttggtaggggtatcgatatcgaacgtgtgaatatagttata
aactatgacatgccggattctgctgatacgtacttgcacagggttggccgcgctggacga
tttggaaccaagggccttgcaattacatttgtttcatgttccactgatgttgatgttctc
aacaatgttcaatccaggtttgaagttgatataaagcagcttcctgagcagattgataca
gctagctacatgccatcctag
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