Vigna radiata (mung bean): 106768674
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Entry
106768674 CDS
T04126
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106768674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vra03041
]
106768674
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106768674
Spliceosome [BR:
vra03041
]
Complex C
Other components
Step II factors
106768674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
cobW
ABC_tran
AAA_16
SLFN-g3_helicase
AAA_30
nSTAND3
Helicase_RecD
SRP54
ATPase_2
FtsK_SpoIIIE
AAA_29
Ribosomal_L32e
nSTAND1
T2SSE
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
106768674
NCBI-ProteinID:
XP_014509420
UniProt:
A0A1S3UTS6
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All DBs
Position
7:19867034..19885193
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AA seq
696 aa
AA seq
DB search
MVSLPIVQYEEKIIETVERNPVVVVIGETGSGKSTQLSQMLHRRGYGKIAVTQPRRVAAV
SVARRVAQELGVQLGEEVGYAIRFEDRTSHSTRIKYLTDGVLLRESLANPELREYSVIIL
DEAHERSLNTDILMGLMKRLVKVRSSDLKVLITSATLDGDKVSKFFADCPVLNIPGKLYP
VEVLYSSERPSSYLESSLKTALDIHIHQPEGDILIFMTGQDDIEKLVSKLEDKVRALEEG
SCMDAIILPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQ
RQYNPSSGMYSLDVVQISKVQANQRAGRAGRTCPGKCYRLYPSRVYNDEFLDVTVPEIQR
SSLAGSVLYLKSLDLPDIDILKFDFLDPPSFESLQDALKQLFLIDAIDENGAITSFGQKM
AELPLEPSLARTLMEANDHGCLSEALTVAAMLSAETTLLPVQRKTEKKRKHSISNLADGS
GLGDHIHLLQIYQCWDQSDFDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKISKGPPDVK
ANGKREEFRQDYRNLRKALCVGYANQLAERKMHHNGYRTLGFQGQVVQVHPSSVLSLDDQ
GKFPDYVVYHELIATPRPYMRNVCAVEMRWVIPIINKLKTLDVYKLSGGMHHVEEEPVKN
LPDLPKKDVEVPSTADDRESRIQAARERFLARKGKK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtttctcttcccatagtccaatatgaagaaaaaattatcgaaaccgttgagcggaac
cccgttgtggttgtcatcggggagacggggtccggcaagagcactcaactctctcagatg
cttcaccgccgcggctatggcaaaatcgcagtcactcagccacgtcgagttgccgccgtt
tccgtcgccagacgagtcgcacaagagctcggcgttcagctcggtgaggaagtaggttac
gccattcgattcgaggataggacttctcacagcacgcgcataaagtatcttactgatgga
gtcctgcttcgtgaaagtctggcaaatcctgagttgcgtgagtattctgttatcatattg
gatgaggcgcatgaacggagtttaaacacggatatattgatgggtctgatgaaacgcctg
gttaaagttcgttcatctgatctcaaagttttgattacgtctgcgactcttgatggcgat
aaagtatccaaattctttgctgattgtccggtattgaacatcccgggaaagttgtatcca
gttgaggttctttatagcagtgagcgtccctcgagctatctcgagtcttcgctgaagaca
gctcttgatatacatattcaccaacctgaaggggatattttaatattcatgactggacag
gatgacatagagaagttggtatctaagttagaagataaggttcgtgctcttgaggaaggt
tcctgcatggatgctataatccttcccctacacggttctttgccccctgaattgcaggtg
cgtgtatttagtcctccccctccaaattgtagacgaattattgttgcgacaaatattgct
gaaacttccttgactgttgatggtgtagtgtatgttattgactctgggtatgtaaagcaa
aggcaatacaatccatccagtggcatgtattctcttgatgttgttcaaattagcaaagtg
caagctaaccagcgtgctggccgagctggacgaacatgtcctgggaaatgctaccgactg
tatccctcccgtgtttacaatgatgagtttttggatgttacagttccagaaattcagaga
tcttcccttgcgggcagtgttctttacttgaagtcattggacctcccagatattgacatt
ctaaaatttgactttctggatcctccatcatttgagtccttacaagatgccttgaagcag
ttatttctaattgatgctatagatgaaaatggtgcaattacaagttttggacagaaaatg
gctgagcttccattagaaccatccttagcaagaactttaatggaggcaaacgatcatggt
tgcttatctgaggctttgactgttgctgccatgttatcagctgagactacattgctacct
gtgcagagaaagactgagaaaaagagaaaacactcaatatctaaccttgccgatggttct
ggattgggtgatcacattcatttgctacaaatataccaatgctgggatcaaagtgatttt
gacattggatggtgcaaagataacggcttgcaggtgcgagggatgctgtttgtcagagat
gtccgtaagcagttatcccagataatgcagaaaatatcaaagggaccgccggatgtaaag
gctaatgggaaaagagaagagttcagacaagattatcgaaatttaaggaaggctttatgt
gtgggctatgcaaatcagctggctgaaagaaagatgcatcacaatggttatcgaactctg
ggtttccaaggtcaagtagtgcaggtgcatccatcatctgtattgagtcttgatgaccag
ggaaagttcccagactatgtggtgtaccatgaactaattgcaacgccacgtccatacatg
agaaatgtatgtgctgttgagatgagatgggttatacccattattaacaagctcaagacc
ctagatgtgtacaaattaagtggtggtatgcatcatgttgaggaggagcctgtgaaaaat
cttccagatttacctaagaaggatgttgaggttcccagtactgccgatgatcgtgaaagc
agaatccaagctgctagagaacgatttcttgctcgaaaaggcaaaaaatga
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