Vigna radiata (mung bean): 106771239
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Entry
106771239 CDS
T04126
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03018
RNA degradation
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106771239
09123 Folding, sorting and degradation
03018 RNA degradation
106771239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106771239
03041 Spliceosome [BR:
vra03041
]
106771239
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106771239
mRNA degradation factors
5'-3' decay
Lsm complex
106771239
Spliceosome [BR:
vra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106771239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
106771239
NCBI-ProteinID:
XP_014512670
UniProt:
A0A1S3V2Z5
LinkDB
All DBs
Position
8:complement(27927411..27929620)
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGRDDGPGGRQTKGIGRGLED
GGPKGQGGGRGRGGPGGKPGGIRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccctttcccttctcaagactgcccaaggccaccctatgttggtggaactgaaa
aatggagagacttataacggccatttggtaaattgtgatacatggatgaacatccatctc
agagaagtcatttgtacatctaaagatggagataggttttggcgtatgcctgagtgctac
attcgtggtaataccattaagtaccttcgggttcctgatgaggttattgacaaagtccag
gaagaaacaaagagccgtgccgatcgcaaaccccctggtgtgggacgtggaaggggaaga
ggtagggatgatggtcctggaggacggcaaacaaaaggaatcgggcgtggccttgaagat
ggtggaccaaaaggacaaggaggaggtcgaggcaggggtggtccaggtggaaagccaggt
ggaatcagaggtgcagggcgaggtagaggttaa
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