Vigna radiata (mung bean): 106771898
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Entry
106771898 CDS
T04126
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106771898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vra03041
]
106771898
Spliceosome [BR:
vra03041
]
Complex A
U1 snRNP components
U1 related factors
106771898
Complex B
106771898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Borrelia_P83
WW_2
SMODS
DUF2981
Motif
Other DBs
NCBI-GeneID:
106771898
NCBI-ProteinID:
XP_014513410
UniProt:
A0A1S3V549
LinkDB
All DBs
Position
8:41970496..41990523
Genome browser
AA seq
1017 aa
AA seq
DB search
MSNNPQFPGLQPLRPPITGSVDPPRNYAPPMPVQFRPVVPAQQPQQFISMPSQHYQHHQH
QPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNLHIPSE
SMMPQPDSQAPNGYTPGVGGPGMTLSSSYTFAAPTYGQVQTNFNSTGQFQPVPQVHALTG
SSSQSITTGTTLQSNGGGQPLVPTVMPSATIVQPQLAKNGSTDWIEHTTSTGRTFYYNKK
TKVSSWEKPFELMTPIERVDESTNWKEYISPDGRKYFYNKVTKESKWLIPEELKLAREQV
EKAIASGPHSEALLNSHIQPSPASSVAEATDNISVSSQGEPSSPVSVAPVVTTSTSTLQP
EMPSGPSTSPSATPITGTKVDELEAPVNTVTPSDTSMGGDKAVDTDVSTAITPTNDTNND
SNQDALGSADGVPAEEKEDGKTDSIGERSNHVAAETKAVEPETLVFANKMEAKDAFKALL
DSANVGSDWTWDRAMRLIINDKRYGALKTLGERKQAFNEYLNHRKKHEAEEKRMKQKKAR
EDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELVNKERARV
QEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSCLEKIDRLEIFQDYLRDLE
KEEEEQKKIQKEELRKTERKNRDEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYIAV
ASNTSGSTPKDLYEDVAEELDKQYHEEKSRIKDAMKLAKITLFSTWTFEDFKSALSKDIG
TSPISDFNLKLVFEELLERVKEKEEKEAKKRKRLADDFFHLLYSIKDITVSSNWEDSIPL
VEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERIRKEERMKKEKDREERERRKGKQR
REKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKE
KTKKSHGHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDRW
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataatccgcaatttccaggtttacagcctcttcggcctcctattaccggttca
gtggatcctccccgcaattatgctccacctatgcctgttcagttccgacccgttgttcct
gctcagcagccacaacagttcatttccatgccttctcaacattaccagcatcatcaacat
caacctgttggtcctggtggtgttcccatgattggtgttggcatgcctcctcaaaatcaa
cagccccaattttctcaaccaattcaacagttacccccaagacctagtccgcagttgcca
cccccatcgcaggcaattccaatgccggttgctcgcccaaacctgcacatcccatctgaa
tcaatgatgcctcaacctgattctcaagctccaaatggttacacaccaggtgtaggtggt
ccaggaatgacactctcttcatcatatacgtttgcagcacccacttatggtcaagtgcag
acaaattttaattctaccgggcaatttcaacctgttcctcaagtccatgctctcacgggc
tcttcatcccagagcattaccacagggacaactcttcagagcaacggtggaggacagcct
ttagttccaactgtcatgccttcggctaccattgtccagccacagctagctaagaatggc
tccacagattggatagagcataccacttctactggaagaacattttattacaataagaaa
actaaagtatctagttgggagaagccttttgaattgatgacgcctattgagagagtggat
gaatcaacaaactggaaggagtatattagtcccgatggacgaaagtatttctacaacaag
gtcacaaaggaatctaagtggttaattcccgaggaactgaagttggcccgtgagcaagtt
gagaaagcaattgccagtggaccacattctgaagcattattgaattctcatattcaaccc
tctccggcatcttctgtggctgaagcaacagataatatatctgtaagcagtcaaggggaa
ccatcaagtcctgtttcagttgctccagttgttactacatccacaagtactctacaaccc
gagatgccttctggaccatctacatctccttctgcaacccctataactggaacaaaagtg
gatgaactcgaggcacctgtaaatactgtcacaccatcagataccagtatgggaggtgat
aaagctgttgatacggatgttagcactgctataactccaacgaatgacactaacaatgat
tcaaatcaagatgctctaggttctgccgatggagttcctgcagaagagaaagaagatggt
aaaactgattcaataggggagagaagtaatcacgtggctgcagaaacaaaggcagttgag
ccagaaacccttgtttttgcaaataagatggaggccaaagatgctttcaaagcactcttg
gattctgcaaatgttggatctgactggacttgggatcgggctatgcgtttaataattaat
gataaaaggtatggtgcgttaaaaacactcggtgaaaggaagcaagctttcaatgagtac
ttaaatcataggaaaaaacatgaagctgaggaaaagcgaatgaaacagaaaaaagcacgg
gaggattttaaaaaaatgttagaagaatccacggacttgacttcatccactagatggagc
aaagccgtgtctatatttgaaaacgatgaacgtttcaaggctgttgaacgtgacagagat
cgtagggatatgtttgaaagctttttggaggaacttgtaaacaaggaacgagcaagggta
caggaggaacgaaagcgaaatataatggaatacaaaaagtttttggaatcttgtgacttt
ataaaggctagtacacagtggagaaaagttcaagatcgcttagaggctgatgaaagatgt
tcctgtcttgaaaaaattgatcgcttggagatattccaggattatttacgtgatttagaa
aaggaagaggaagagcagaagaagattcaaaaggaagaattgagaaagacagaacgtaaa
aaccgtgatgaattccgcaaattgatggaagagcatatcgcctcaggcattcttacagca
aaaactcactggcgtgattattatacaaaggtgaaagatttacatgcctacatagcagtg
gcatcaaacacatcgggttcaactcccaaagacttgtatgaagatgttgctgaagagcta
gataaacaatatcatgaagaaaaaagtcgaataaaagatgcaatgaaattggcaaagatc
accttattctcaacctggacgtttgaagacttcaaatcagctttatcaaaagacattggt
acttctccaatatctgacttcaatttaaagcttgtgtttgaagagctactagaaagggtg
aaagagaaggaggagaaggaagctaagaagcgcaaacgtcttgccgatgatttctttcat
ctgctatattctatcaaggatattaccgtgtcttcaaattgggaggactcaataccactt
gttgaagatagccaggagttcaggtctattggagatgaaagcctttgcaaggaagtattt
gaggagtacattgcacaacttaaagaagaggcaaaggaaagtgagcggatacggaaggag
gaaaggatgaagaaggaaaaagacagggaggaaagagagagaaggaaagggaagcaaaga
cgggagaaagatggagggcgtgaaagagggaaagatgaggcacacaagaaggataaagca
gacagtgacagtatggagttatctgaaatccaatcatccaaagaaaacaaaaggtctgaa
gatgatagtagaaaacaaaggaagcagcgtcatagtcccgagcacgaaatggataaagag
aagactaagaaatctcacggtcatggaagtgaccgcaagaagtcaaagcgccgtgcatct
ggccatgaatcagatgaaggacgccacaaaagacacaagagagaccaccgcagagaaggt
gatcatggagatcttgaagatggggaatttggagatggtgtggatagatggtag
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