Vigna radiata (mung bean): 106771930
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Entry
106771930 CDS
T04126
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106771930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vra03021
]
106771930
03019 Messenger RNA biogenesis [BR:
vra03019
]
106771930
Transcription machinery [BR:
vra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106771930
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106771930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Pesticin
Motif
Other DBs
NCBI-GeneID:
106771930
NCBI-ProteinID:
XP_014513470
UniProt:
A0A1S3V547
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All DBs
Position
8:15499423..15508448
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AA seq
969 aa
AA seq
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MENSRRLFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGASTLPSARFRTNERDV
ESNEFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEK
AIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVH
QSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKY
LERQRLQQSSRTKGVDDMTGAISNSNDDQEIPGRTLGVLRSWVDHNVTVSVNARENDHRA
RRDAFNDSVPEKSTSASYGSNELGSNISRNIGLGISRPSGRVTESGHDKGWYNKSGVAAG
TMPGQRNGLSHKYSFSSTEAPKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDE
MNSGLTGHGTSIVSSLSKDAWTADDENLEVEDRIQVRNPFVVNADRELAIESQANEKKQF
PASQHHSSLSWPLQEQHSIHELNRKAGHSSRFVSTLGAIPTNTNASTARMGSRPFLSSAT
IGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPGPFSSMTFQARHQQQLGTSLEVTVKTEK
PPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSVSTSALPSSLGPSGDNS
SALSKMPQRKAGQPPRLSTLPSASSNVSSASAQTSDTSNNLNPIANLLSSLVAKGLISAE
TESTSKVPSELLNRLEEESDSITTGNSLPVASISGSAAVPVPSIKDEVDDTARTPLSLSE
STSPGVVNLIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHAT
RDREENGLTKASRWYLKSSDWIVGKAEYVSENEADSVDTYGNEADRSQEDAMVVADENQC
LCVLCGELFEDFYCEESGEWMFKGAVYFANSDSNSEMGTGDMGTRRGPIIHANCLSDNLI
SCVPEMGQD
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcgcgtagactgttcgatagatcgcgagagcctggaccgaagaagccccga
ttgatggaagagctggatcgggctccgaattctggtgcgagacagtttcctcagctacaa
gtgatttctggggcttcgacgttaccgtctgcaaggtttagaacaaacgaaagagacgtt
gaaagcaatgaatttggtcgccggggtggtgctggaggtggcggttatcagccccagcca
ctgccatttcaggagcttgttactcagtataaggcagctctagcagaacttactttcaac
tcgaaaccgataattaccaacttgactatcattgcaggggagaaccaagctgcggagaag
gccattgcagcaactgtttgtgctaacattctagaggttcctagtgatcaaaagctgcca
tcactttatctcttagacagtattgttaagaacattgggcgggattatataaaatacttc
gctgccaggctacctgaggtattctgcaaagcatacagacaggttgatccttcagtccat
caaagtatgaggcatctttttggaacttggaaaggagtctttcctcctcagacccttcag
attattgagaaagaactgggcttcacttctgcagtcaatggctcatctgcttcttctaca
ctcaggagtgattcacagtcacaacgtccacctcatagtattcatgttaatcccaagtat
ttagaaagacaacgtcttcagcagtccagcaggactaaaggagttgatgatatgactgga
gcaatttcaaactcaaatgatgaccaagagattcctggtagaactttaggtgttttacga
tcatgggtggatcataatgttactgttagcgtcaatgcacgtgaaaatgatcatcgtgct
cgaagagatgcattcaatgattctgttccagaaaagagcactagtgcatcctatggaagc
aatgaacttggttccaatatttcaaggaatataggcttgggtatcagccgacctagtggt
agggtgaccgagtcaggacatgacaaaggttggtacaacaaatctggtgttgctgcgggg
accatgcccgggcaaagaaatggtttgagtcacaagtatagtttttcaagtactgaagca
ccaaagtccatggttttggatgcacatcatcaaccggcacataatataactagcacacag
agcagtgtgatctcaaatagctggaaaaattccgaggaagaggagtacacatgggatgag
atgaactctggcttgactggtcatggtacatcaattgttagcagcttgagcaaagatgct
tggactgctgatgatgagaatttggaagttgaagatcgcatccaagtcagaaatcctttt
gtggtaaatgctgatagagaattagctattgaatctcaagccaatgaaaagaaacaattt
cctgcatctcaacatcattcatcactatcatggccattgcaggagcagcattctattcat
gagttgaatcgaaaagctggtcactccagcagatttgtgtccacacttggtgccataccg
accaatacaaatgcctctactgccagaatggggagtcggccattcctgtcaagtgcaacc
ataggattgccaggaattgcaggaccctttcattctttgggagctgaaaacccttcaggg
cagtcacctttgcagcggaggtctccatcaccgccaggtccattctcttcaatgactttt
caggcaaggcatcagcagcaattgggcacttctcttgaggtcactgttaagactgagaag
ccacctgtgtccaaggttcctttagtcagagaaactaaaagtagcatgagtacagggaat
cttccaactcgattaggtgttcggccttcaagaacaggtggtccttcccctgccacatta
atttcttcagtgtccacaagtgcattaccatcttcattaggtccttctggtgataattca
tctgctctctcaaaaatgcctcaaagaaaggctggacaaccacctaggttatctactcta
ccatctgcttcctctaatgtcagcagtgcctctgcccagacaagtgataccagtaataac
ttgaatccaattgccaaccttttaagctctttagttgcaaaaggcttgatatctgcagaa
acagaatcaacatctaaggtgccctctgagttgctgaatcgactggaagaagaaagcgat
agcattaccaccggtaactctttgcctgtggcctcaatttctggttctgcagctgttcca
gtcccttcaatcaaagatgaggttgatgacactgcaagaacgcccctatccttgtctgaa
tcaaccagtccaggagttgtaaatctcattggctttgagtttaagcatgatgtattacga
gaattccattcatctgtaattagtggattatttgatgatcttccacatcattgcagcatt
tgtggctttagacttagattccaaaagcagttcaatagacacttggagtggcatgccaca
agggatagagaagagaatggtttaactaaggcatcgagatggtatcttaagtcaagtgac
tggattgttggcaaggctgaatatgtatcagagaatgaggctgattctgtagatacatat
ggcaatgaagcagacagaagtcaagaggatgctatggttgtagcagatgaaaaccaatgc
ttgtgtgtgttgtgcggtgagctatttgaggatttttattgtgaggaaagtggggaatgg
atgttcaaaggagctgtttactttgctaactctgatagcaacagtgagatgggaaccgga
gatatgggtactagaaggggtcccatcattcatgcaaattgcttatcagataacttgatt
tcatgtgtccctgagatgggacaggattaa
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