Vigna radiata (mung bean): 106772085
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Entry
106772085 CDS
T04126
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106772085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106772085
Enzymes [BR:
vra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
106772085
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106772085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CTLH
Clp1
CLP1_N
nSTAND3
zf-RING_UBOX
CbiA
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
106772085
NCBI-ProteinID:
XP_014513731
UniProt:
A0A1S3V5V7
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Position
8:complement(45110580..45119366)
Genome browser
AA seq
868 aa
AA seq
DB search
MAYGGAGPVGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIW
LNFPPRLKFAVFTWFGATIEMDGATETDYTADETPMVSYVNVHAILDGRRSRAKASSPDD
FESSQGPRVIVVGPTDSGKSTLSRMFLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
EMPIDPVEGIPLEMPLVYFYGHATPSNNVELYKVLVKELSGMIERQFTGNAESRASGMVI
NTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVV
SRNAKVRQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEP
AADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSS
GELPSKYLIMGSLTCLYKHSLSNPLSNLRFYFLLHSSPMEMDSLPNGNNATGTPIAATPN
PAPPPPSNLPQLTESLKLEHQFLRVPFEHYKKTLRANHRAVEKEMSAVISGVNEAADLSP
DDAVNHLNSLVSRLQGLKRKLEEGSRAEHLQAQKCRARLDHLESADAENMPEWNNTRLKR
ILVDYMLRMSYYDTAVKLAESSNLQDLVDIDVFQEAKKVIDALQNRDVAPGLAWCADNKS
RLKKSKSKLEFQLRLQEFIELVRAENNLRAITYARKYLAPWGATHMKELQRVLATLAFKK
DTECATYKVLFEDKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALKTPYCYEDDC
TKEDPLSQEAFRTLALPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEM
AKKNNGRIICPRTGLVCSDTDLVKAYIS
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtgcaggtcctgtgggtggttcgggatctgcatccaccattaagcaa
gtgaaattggagagagaaagcgaactcagaatagaagtgggtaacgacgcaccacttcgc
cttcgactccttaacggaactgctgaaattttcggcaccgagcttcctcccgaaatctgg
ctcaatttccctccgagactcaagttcgctgtgtttacttggtttggtgcgaccattgaa
atggacggagctactgaaactgattatactgccgatgagactcccatggtaagctatgta
aatgtgcatgccatactggatggaagaagaagtcgtgccaaagcttcatcacctgatgat
tttgaatcttctcagggtcctagggtcattgttgtagggcctactgattctggaaagagt
accttgtccaggatgtttcttagttgggcggctaaacaaggatggaaacctacctttgtt
gacttggatattggccaaggctctataacaattcctggatgcattgctgccactccaatt
gaaatgcccattgatcctgtggaaggtattccacttgaaatgcctcttgtatacttttac
gggcatgcaactccaagcaacaacgtagaattgtataaagtgcttgtcaaggagctttca
gggatgattgagagacaatttactggaaatgctgaatctcgagcttcaggcatggtgata
aatactatgggatggatagaaggagtaggctatgatttgctcttgcatgcaattcgtaca
ttcaaggccaatgttgtcttggttttaggtcaggaaaaattgtgcagcatgctcaaagat
gtgcttaagagtgagcccaaagtagatgttgtgaaacttcagaggtcaggtggagttgta
tctaggaatgcaaaagtcaggcagaaggccagaagttataggataagggagtacttctat
ggcctttcaaatgatctttctccacattctaatattgcaaattttagtgatttgtttgtt
tatcgagttggtggtgggccacaggccccacgatcagccttgccaattggagcggaacct
gctgcagatccaacaagagttgtacctgtaaacataaatcgtgatttgctccatcttgtc
cttgctgtctcatttgccaaggaacctgatgagatcatttccagcaatgttgccgggttc
atttatgtaacagacattgatattcagagaaagaagataacataccttgctccgtcttct
ggagagcttccaagcaagtatttgataatgggatccttgacatgcttatataagcatagt
ttatccaatccacttagcaatctgagattctattttcttctccattcttccccgatggaa
atggattcccttcccaacggcaacaacgccaccggaactccgatcgccgccacccccaac
ccggcgccgcctccgccgtcgaaccttccccaactgacagagtctctgaagctggaacac
cagttcctcagggttcctttcgagcactacaaaaaaaccctccgtgccaaccaccgcgcc
gtcgagaaggagatgtccgccgtcatatccggcgtcaacgaagccgctgacctctcccca
gatgatgccgtcaaccatcttaactcccttgtctcccgcttgcaagggctcaagagaaag
ttggaggagggaagtcgggcagagcatttacaagctcaaaagtgtcgagcacgtctcgat
cacttagaatctgccgatgcagaaaacatgccagaatggaataacactcgcttgaagcgg
attcttgttgattatatgttgaggatgtcatactatgacactgcagtgaaacttgcagaa
agcagcaacttgcaggatcttgttgatattgatgtattccaagaagcaaaaaaggttatt
gatgctttgcaaaatagggatgttgcacctggcctagcatggtgtgctgataataaatca
aggctgaagaagtctaagagcaaattggagttccagttgagacttcaagagttcatagaa
ttagtaagagctgagaacaatttgagagctatcacgtatgctaggaaatatcttgcgcca
tggggagccacccacatgaaagaattgcagcgagtccttgcaacactagcttttaaaaag
gatactgaatgtgccacatacaaggttttatttgaagataagcaatgggattttctagtg
gaccaattcaaacaggagttctgcaagttatatggcatgacattagaacccttgctcaat
atctatctgcaagctgggctttccgctctcaagacaccatattgttacgaggatgattgc
acaaaagaagatccgctatcacaggaagctttccgcacattagccctgccattgccgtac
tcaaagcagcatcactctaagcttgtttgctatataacaaaggagttaatggacactgag
aacccaccgcaagtcttgcccaatggatatgtttatagcactaaggctcttgaagagatg
gcaaagaagaataatggtagaatcatctgcccgaggacgggtttagtttgcagcgataca
gatctggtaaaggcatatatttcataa
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