Vigna radiata (mung bean): 106773375
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Entry
106773375 CDS
T04126
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106773375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106773375
03041 Spliceosome [BR:
vra03041
]
106773375
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106773375
Spliceosome [BR:
vra03041
]
Complex B
Other components
Prp19-related factors
106773375
Complex C
106773375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_15
TPR_2
TPR_19
Mad3_BUB1_I
TPR_8
ARM_TT21
NRDE-2
ARM_TT21_C
PPR
Motif
Other DBs
NCBI-GeneID:
106773375
NCBI-ProteinID:
XP_014515558
UniProt:
A0A1S3VB26
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All DBs
Position
9:12832495..12835088
Genome browser
AA seq
759 aa
AA seq
DB search
MAIAQDFYPSEDELFYEEELLRNPFSLKIWWRHLIARSEAPFKKRFVIYERALKALPGSY
KLWHAYLRERLDLVRNLPVTHSQYDTLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALSALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYCRYLKYDPSHIEDFIEFL
LNSSLWQEASERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVEAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGLSTVITVRDFSVIFDSYSQFEESML
AYKMEEEDDEGEENGFEEVDFERKILHGFWLNDKNDKDLRLARFDYLMERRLELANSVLL
RQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKPHTLWVGFAKLYEQHKD
LANARVIFEKAVQMNYKTVDNLASVWCEWAQMLLKHKNVKGALELMRRATAEPSVEVKRK
VAANGNEPVQMKLHKSLRLWTFYVDLEESLGSLESTRAVYERILDLRIATPQIIINYANF
LEEHKYFEDAFKVIERGVKIFKYPHVKDIWVTYLSKFVKRYGKNKLERARELFENAVESA
PADQVKPLYLQYAKLEEDYGLAKRAMKVYDEATKAVPNNEKLSMYEIYISRAAEIFGVSK
TREIYEQAIQSGLTDKDVKTMCLKYGEMEKSLGEIDRARAVYVFASQYADSEFWNKWHEF
EVQHGNEDTFREMLRIKRNISLSYNQSNSNLKKRKYESL
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcgcaagatttttatccctcagaagacgagcttttctacgaagaggagttg
cttcgaaaccctttcagccttaagatatggtggcgtcacctaattgcgcgttcggaagct
ccgttcaagaagcgcttcgtgatttacgagcgggcactgaaggcgctacccggaagctac
aagctgtggcacgcgtacctccgcgagcgcctcgatctcgttcgcaacctccccgtcact
cactctcaatacgataccctcaataataccttcgagcgtgcattagtcaccatgcacaag
atgccgcgaatttggattatgtatctgcaaaccctaaccaatcagaaattggttactcga
actcgcaggaccttcgacagggctctcagcgccctccccgtcacccagcacgaccgtatc
tgggaaccttatcttgtgttcgtgagccagaagggtattcctattgagacttctcttcgg
gtttattgcaggtatttgaagtatgatccttctcacattgaggattttattgaatttttg
cttaattcgagtctctggcaagaggcttctgagaggttggcttctgtcctcaatgatgac
cagttttactccattaagggtaagaccaagcaccggctttggttggagttatgtgatttg
ctcactcgccatgccaatgaggtttctgggttgaatgtggaggctatcattaggggtggg
attaggaagttcactgatgaggtgggtaggctttggacttcgcttgcagagtattacatt
aggaggggtttgcatgagaaggctagggatgtgtttgaggagggtttgtctactgttatc
acggttagggattttagtgttatatttgattcttactcgcagtttgaagagagcatgctt
gcttacaagatggaggaagaagatgatgagggtgaggaaaatggctttgaggaagtggat
tttgagaggaagattttgcatgggttttggttgaatgacaagaatgacaaagacttgagg
ttagctcggtttgattaccttatggagaggaggctggaattggctaacagcgtgcttttg
cgtcaaaatcctcataatgtagaacagtggcacaggagggtgaagctttttgaagggaat
cctaccaagcagatactgacttacactgaagcggtgaggacgattgatcccatgaaggca
gtgggaaagcctcacactttgtgggttgggtttgctaaattgtatgaacagcacaaagat
cttgccaatgcccgtgtcatatttgaaaaggcagtgcagatgaactacaaaactgtcgat
aatctggctagtgtctggtgtgagtgggctcaaatgcttttaaagcataaaaatgtcaaa
ggagcactcgagctgatgagacgggctacagctgagccgtcagttgaggtgaagcgaaaa
gtggctgcgaatgggaatgaaccagtccagatgaagctacataaatccttgagattgtgg
acattttatgttgatttggaggaaagcctaggttctttggaatctacacgtgctgtttat
gagcgaattttggatttacgaatagccacaccacaaataataatcaattatgcaaacttt
ttggaggaacataagtactttgaagatgcttttaaagttattgaaagaggagtaaagatc
tttaagtaccctcatgttaaagacatatgggttacttatctctctaaatttgtgaagaga
tatggaaagaataaattggagcgagcaagagaattatttgaaaatgcagttgaatcggct
ccagctgatcaagtgaagccactttacctgcaatatgccaagctggaagaggactatggt
ctagccaaaagagctatgaaggtttatgatgaagcaactaaggctgttcctaacaatgag
aagttaagcatgtatgagatatacatttctcgtgcagctgagatatttggtgtctccaaa
acaagagagatctatgagcaggcaattcaatctggtctcacagataaggatgtcaaaacc
atgtgtttgaagtatggtgagatggaaaaaagcttaggtgaaattgaccgggcccgtgca
gtatatgtatttgcatctcagtatgcagattctgagttttggaataagtggcatgagttt
gaggttcagcatggaaatgaagatactttcagagaaatgcttcgtattaagcgaaacatc
tctttaagctacaaccagagcaattccaaccttaaaaaaaggaaatatgaaagtttgtaa
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