Vigna radiata (mung bean): 106774239
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Entry
106774239 CDS
T04126
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03013
Nucleocytoplasmic transport
vra03015
mRNA surveillance pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106774239
09122 Translation
03013 Nucleocytoplasmic transport
106774239
03015 mRNA surveillance pathway
106774239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106774239
03041 Spliceosome [BR:
vra03041
]
106774239
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106774239
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106774239
Spliceosome [BR:
vra03041
]
Complex C
Other components
EJC/TREX
106774239
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106774239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
106774239
NCBI-ProteinID:
XP_014516652
UniProt:
A0A1S3VEL5
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All DBs
Position
9:621578..626387
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AA seq
425 aa
AA seq
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MGELKDPEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIV
DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQVDPVPGQVAALVLCH
TRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALAR
DKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKK
FMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTS
TYMPN
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaattgaaggaccccgaggcttacgaggaagagctccttgattacgaagaagaa
gatgagaaagctcccgattctgccaagcctgcagaatccggcaagaagggctatgttggc
atccatagttcgggttttcgagacttcctgttgaagccagagcttctgcgagccattgta
gattcaggatttgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatctta
ggaatggatgtcatttgtcaagcaaaatctgggatgggaaagactgctgtttttgttctt
tcttcacttcagcaagttgatcctgttcctggtcaagttgcagctcttgttctttgccac
acaagagaactggcttatcagatttgccatgaatttgagagattcagcacatatcttcct
gatataaaggctgctgttttctatggtggcgtcaatatcaaggttcacaaagaattgctc
aagaatgaatgtcctcatattgttgttggaacacctgggaggattcttgctctggctaga
gataaggaccttggtttaaagaacgtgaggcatttcatacttgatgagtgtgacaagatg
cttgaatcacttgatatgagaagagacgtccaggagattttcaaattgactcctcatgat
aaacaagtgatgatgttttcagccacacttagtaaagagattcgacctgtttgcaagaaa
tttatgcaagatcctatggaaatctatgtggatgatgaggccaagttgacgcttcatggt
cttgtccagcactacataaaattgcaagagtcagagaagaaccggaagttgaatgatctt
cttgatgctctggacttcaaccaagtagttatttttgtcaagagtgttagcagagcagca
gagttgaacaagttgcttgtggaatgtaacttcccatccatatgcatacattctgcaatg
tcacaggaagagagattgaaacgatacaaaggcttcaaggaagggaagcaaaggattctc
gtggcaactgacttagtagggagggggattgacatagaacgtgttaatatagttattaat
tatgacatgcctgattctgcggatacttacttgcacagggtaggaagagcgggtagattt
ggcacgaaggggcttgctattacttttgtctcctccactgccgactctgaagttcttaat
caggtgcaatctaggtttgaagttgatattaaggagcttcctgaacaaattgacacttcg
acatacatgccaaattga
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