Vigna radiata (mung bean): 106775770
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Entry
106775770 CDS
T04126
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106775770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106775770
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106775770
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106775770
mRNA degradation factors
3'-5' decay
Ski complex
106775770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
ATF7IP_BD
Motif
Other DBs
NCBI-GeneID:
106775770
NCBI-ProteinID:
XP_014518438
UniProt:
A0A1S3VJ99
LinkDB
All DBs
Position
10:complement(8826685..8854959)
Genome browser
AA seq
1337 aa
AA seq
DB search
MDPIYAANELAFRVGFSGHSGHLRLEPLTTPERHNPLRSIPDYIPPPAFPSETPESIKKY
IEETYLQPRLDPDEFSAEKAGRQWEFDWFDRAEVPLEPSLPRTMIIPVWEPPFRRSNNGS
VKGIWEPKFEEVDVSDLKLGETESGPLPRTSGKDFVRGSINNRPFRPGGLDDSRSVERIL
PEGASNGEWVREILNGGPAQTIPPSLKQGLDFGELKSHPCSWNVCKEANPFQSSSVEKLS
GLSVQFDDLFKKAWEEDADGEQEQDEVESVILEAEVGTTEVSSKPHDSEMSLDDILSVDS
EGPELHLDGFSDEIEQMKKEAWAMHESSDRIVDCFHELVPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTIVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVDRGVVWEEVII
MLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLYHSGELFKICE
SETFLPQGLKAAKEVSRKRNLTAGGASGPKVGISAGHENARGSKRENTSRMKQHGANFSG
TGRGYQNNSNGQSNWELRRADASMWLMLINKLFKKSLLPVVIFCFSKNRCDKSADSLTGT
DLTSSSEKSEIRLFCDKAFSRLKGSDRYLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEM
LFCRGVIKVLFSTETFAMGVNAPARTVVFDSLRKFDGKEFRQLLSGEYTQMAGRAGRRGL
DKIGTVILICRDELPEESDLKRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRS
FAEFHAQKKLPEMQQLLKRKLDQPRKAIECIKGEPTIEEYYDLYSEAETYNSQISEAILQ
SPSAQQFLNRGRVVIVKSESAQDHLLGVVVKTPSPSNKTYIVFVIKPDMPSLMQSASSGA
IQNKSGSFDQGYFVMPKSRRGLLDEYSTSVSARKGKGIINITMPYCGSASGMGYEVREVD
SKEFLCICSTKIKIDPVGLLEDVSSSVYSKTVQLLVDLKSDGNKYPPALDPVKDLKLRDV
KLVATYQKWTRLLEKMSQNQCHGCIKLEEHLKLAKEIKKHEEEVYALQFQMSDEALKQMP
DFQGRIDVLKKIECIDEDLVVQMKGRVACEMNSGEELICTECLFENQMDELEPEEAVAIM
SAFVFQQRNTSEPSLTPKLAEAKHRLYKTALRLGELQAQFNLPINPAEYAQENLKFGLVE
VVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASN
AIKRDIVFAASLYITGV
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatctatgcagccaacgagctcgctttccgggtcgggttttccggccacagt
ggtcacctcagactggagccgctcaccacgccggagcgccacaacccgctccgttccatt
cccgattacattccgccacctgcctttcctagcgagacacctgaatctataaagaagtac
atagaagagacgtatctccagccaagattggatcctgatgaattttcggcagaaaaagct
gggaggcagtgggagtttgactggtttgatagggctgaagttcctctggagccatcactg
ccacgaactatgatcattccagtttgggaaccaccatttcgacgttcaaacaatggatca
gttaaaggaatctgggaaccaaaatttgaggaggtggatgtatctgatctgaagttggga
gagaccgaatctgggccattaccacgcacttctggaaaggactttgtaaggggaagcatt
aacaaccgtcctttccgtccaggaggtttggatgattctagaagtgtagaaagaattctt
ccagaaggtgcttcaaatggtgaatgggtgcgtgaaattttgaatggtggtcctgctcag
acaattcctccaagcttaaagcaaggattggactttggcgagctcaagtcccatccatgc
tcatggaatgtctgcaaggaagccaatcctttccagagttcatcggttgaaaaattgagt
ggattgtccgtacagtttgatgacttgtttaagaaggcttgggaagaagatgctgatgga
gaacaagagcaagatgaagtggagtctgttatattggaagctgaagttggtacaactgag
gtgtcaagtaaaccacatgatagtgaaatgtcacttgatgatattttgtcagttgattca
gaaggaccagaattgcatttggatggatttagtgatgaaattgaacagatgaagaaggag
gcttgggctatgcatgagtccagtgaccgaattgtagattgctttcacgaacttgttcct
gacatggcactagagtttccatttgaactggatgcatttcagaaggaggctatttattat
cttgagaagggggagtctgtttttgttgctgctcacacatcagctggaaaaactatagtt
gccgaatatgcatttgctttagcatcaaaacattgcactagagcagtgtatactgctcca
ataaaaacaatcagcaatcagaaatatagagatttctgtggaaagtttgatgttgggctt
cttactggggatgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatt
ttaagatcaatgctctaccggggtgctgatataattcgggacatcgaatgggttatattt
gatgaggtgcactatgtcaatgatgtagatagaggagttgtttgggaagaagtaattatc
atgcttccaagacacatcaatatagtcctcctttctgccacggttcctaatactattgaa
tttgccgattggattggcaggacaaaacaaaaggaaataagggttacaggaacaacaaaa
agacccgtcccattggagcactgcctgtatcattctggagaacttttcaaaatttgtgaa
agtgaaacatttctgcctcagggattgaaagctgctaaagaagtttcaagaaaaaggaat
ttgactgctggtggtgcttctggaccaaaggtgggtatttcagcaggtcatgaaaatgcc
agaggttcaaaacgtgaaaatacatcccgcatgaagcagcatggagctaatttctctgga
actggtagaggctatcaaaataatagcaatggccagagcaattgggaattgaggagagca
gatgcttcaatgtggttgatgcttatcaacaagctcttcaaaaagtcattattgcctgtg
gttatattttgtttttctaagaatcgctgtgataaatcagctgatagtttgactggaact
gacttaactagtagctcagagaaaagtgagatccgacttttctgtgacaaagcattttcg
cgactgaagggatctgacagatatttaccacaggttgttcgagtacagaatcttcttcgc
agaggtattggtgtacatcacgctggccttcttccaattgtaaaggaagttgttgaaatg
ctcttttgccgaggggttatcaaggtcttgttttcaactgagacatttgcaatgggagtc
aatgcacctgctagaacagtagtttttgattctctaaggaagtttgatggcaaggaattt
aggcagctactatcaggagaatatactcaaatggctggtcgtgctggcagaagaggactt
gacaagattggtactgttattctgatatgtcgtgatgaactcccagaagagagtgattta
aagcgtgttattgttggaagtgcaactagacttgaatctcaatttcggctaacctacatt
atgattctacatcttcttcgggttgaggaattaaaggtagaggacatgcttaaaagaagt
tttgcggaattccatgctcagaaaaagcttccagaaatgcaacagcttttgaagcgaaaa
cttgaccagcccagaaaggctattgaatgtataaagggtgaaccaaccattgaagaatac
tatgatttatattcagaagctgagacatacaacagccaaatatcagaggcaattttgcag
tctcctagtgctcaacagtttctcaataggggaagagttgtaattgtaaaatcagaatca
gcgcaggaccatttgcttggagtggttgtgaaaactccatcacccagtaataagacatat
attgtttttgtgattaaacctgacatgccatccttgatgcaaagtgcctccagtggggct
atacagaataaaagtggttcatttgaccaaggttattttgtaatgccaaaatcaagacgt
gggcttttagatgaatatagtacatctgtttctgcccgcaaaggaaaaggtatcatcaac
atcacaatgccctattgtggctctgccagtggaatgggctatgaagttcgagaagttgac
agtaaagaatttctgtgcatatgcagtaccaaaattaaaattgacccagttggacttctt
gaagatgttagcagctctgtttattcaaagactgttcagttgcttgtggatttgaaatca
gatggaaataagtatcctccagctttggatcccgtcaaagatctgaagttaagagacgtg
aagcttgtggcaacataccaaaagtggactagattattggagaagatgtcccagaatcag
tgtcatgggtgtataaaattggaagaacacctcaaattggcgaaggagattaaaaaacat
gaagaagaagtctatgctcttcagtttcaaatgtcagatgaagcacttaaacagatgcct
gactttcagggccggatagatgttctgaagaaaattgaatgcattgatgaagaccttgtt
gttcaaatgaaaggtcgtgttgcttgtgagatgaattctggggaggaactgatatgtacg
gagtgcttgtttgagaaccaaatggatgaactggaaccagaagaagcagtggcgataatg
tccgcttttgtgttccaacagaggaatacgtctgaaccgtctctcacacccaagctcgct
gaagctaaacacagattgtacaaaacagctttaagacttggagagctccaagcgcaattt
aatctgccaataaaccctgctgagtatgcccaagaaaatctaaaatttggtcttgtagaa
gtggtttatgaatgggcaaagggtactccgtttgctgaaatatgtgagcttactgatgtt
cctgaaggcctgatagtaaggaccattgtcagattggacgagacatgtcgggaattcaaa
aatgctgcagcaataatgggtaattctgctctctgcaaaaaaatggaaattgcttctaat
gcaataaagcgtgacattgtatttgcggctagcttgtatattactggtgtatga
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