Vigna radiata (mung bean): 106776265
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Entry
106776265 CDS
T04126
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106776265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vra03041
]
106776265
Spliceosome [BR:
vra03041
]
Complex B
Other components
Prp19-related factors
106776265
Complex C
106776265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
zf-CCCH
zf-CCCH_3
RRM_occluded
zf-CCCH_4
zf-CCCH_10
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
106776265
NCBI-ProteinID:
XP_014519148
UniProt:
A0A1S3VLA8
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Position
10:4559557..4563952
Genome browser
AA seq
482 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNKEYFAE
EHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELCNKLVIKGLRLKLMWGR
PQTSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVVYYNNPPPAQQERSYYP
SMDPQRMGALIPSQDGPPPGGPSGSGENKPGLEKQQMQHYPHSLMPPPPGQYHHQYYPPY
GYMPPAPPYHHHQCPPPYNAAGPPSQPPAGNHPYQHSIQPGPGQAATAPADTGTSTSGSQ
QQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctcagagaccacgaagccgacggttgggagcgctccgattttcct
attatctgcgaatcctgcctcggcgacagcccatacgttcgaatgaccagagcagactat
gacaaggagtgcaagatatgtacacggccattcactgttttcagatggagacctggtcga
gatgcaagatataagaaaagtgagatctgtcagacatgcagcaaattgaaaaatgtctgt
caagtgtgccttctggaccttgaatacggactaccagttcaagttcgggacactgctctc
agtattgattccaatgatgccattccaaagagtgatgttaataaggagtatttcgctgaa
gagcatgaccgtagggctagagctggtatagattatgaatcctcttatggtaaagtacgc
ccaaatgatactatcatgaagcttcaaaggacaacaccatattacaagagaaaccgagcc
catatttgcagtttctatataaggggtgaatgtaccagaggagctgagtgcccttatcga
catgagatgccagtcactggggagttgtctcaacaaaatattaaagatcgttattatgga
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatgaccactctggag
gctcctgaggatgagagcattaaaactctttatgttggtggacttgatgctagggtcact
gagcaggatttgagggatcacttctatgcccatggagaaattgaatccatcaaaatggtt
ctccaacgggcttgtgcttttgtaacatatacaaccagggaaggtgcagagaaagcagca
gaagaactctgcaacaaattggttattaagggcctaaggctaaagctgatgtggggcagg
cctcagacctcaaaacctgagtctgacagttctgatcaagcaaggcagcaggcatctgtt
gctcacagtggattgttgcctcgggcagttatatcacagcagcagaaccaggaccaaacc
caaggagtggtttactataacaatcccccaccagctcagcaggaaagaagctactaccca
tcaatggatcctcaaagaatgggtgctcttattccatcccaagatggtcctcctcctggt
gggccttctgggtcaggggagaacaagcctggtttggaaaagcagcagatgcaacattat
ccccattcattgatgcctcctccgcctggccaatatcatcatcagtattatcctccatat
ggttatatgcctccagctcccccttatcaccatcatcagtgtccacctccatacaatgct
gcagggcctccatcacagccaccagcaggaaatcatccttatcagcattctatacagcca
gggcctggacaggccgcaactgcccccgctgatactggaacatcaacttcagggtcacag
cagcaataa
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