Vigna radiata (mung bean): 106776271
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Entry
106776271 CDS
T04126
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106776271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106776271
03041 Spliceosome [BR:
vra03041
]
106776271
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106776271
Spliceosome [BR:
vra03041
]
Complex B
Other components
Prp19-related factors
106776271
Complex C
106776271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
TPR_19
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
106776271
NCBI-ProteinID:
XP_022642547
UniProt:
A0A3Q0FJZ4
LinkDB
All DBs
Position
10:18736829..18740137
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AA seq
814 aa
AA seq
DB search
MAIAQDLYPSEDDLLYEEELLRNPFSLKLWWRYLIARSEAPFKKRFVIYERALKALPGSY
KLWHAYLRERLDLVRNLPVTHSQYDTLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
LNSSLWQEASESLASVLNDDQFYSIKGKTKHRLWLELCDLITRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVITVRDFSVIFDSYSQFEESMF
AYKTEEMGLSDEEIDEGEENGFEEVEEEDICVKGRLVDEDFERKILHGFWLNDKNDIDLR
LARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKXILTYTEAVRTIDPMKA
VGKPHTLWVGFAKLYEKHKDLANARVIFEKAVQMNYKTVDNLASVWCEWAEMELKQKNVK
GALELIRRATAEPSVEVKRKVAANGNEPVQMKLHKSLRLWTFYVDLEESLDSLESTRAVY
ERILDLGIATPQIIINYAYFLEEHKYFEDAFKVSERGVKIFKYPHVKDIWVTYLSKFVKR
YGKNKLERARELFENAVESAPADQVKPLYLQYAKLEEDFGLAKRAMKVYDQATKAVPNNE
KLSMYEIYISRAAEIFGVSKTREIYEQAIESGLTDKDVKSMCLKYAELEKSLGEIDRARA
VYVFASQYADSEFWNKWHEFEVQHGNEDTFREMLRIKRNISLSYNQAHFIKDVPSAVFGG
LIRKRDDDENNGEVDAAKENRLGALERIKRLKRN
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcacaagatttgtatccctcagaagacgaccttttgtacgaagaggagttg
cttcgaaaccctttcagccttaagctatggtggcgttacctaattgcgcgttcggaagct
ccgttcaagaagcgcttcgtgatttacgagcgggcactgaaggcgcttcccggaagctac
aagctgtggcacgcgtacctccgcgagcgcctcgacctcgttcgcaacctccccgtcact
cactctcaatacgatacgctcaataataccttcgagcgtgcattagtcacaatgcacaag
atgccgcgaatttggattatgtatctgcaaaccctaaccaatcagaaattggttactcga
actcgcaggaccttcgacagggctctctgcgccctccccgtcacccagcacgaccgtatc
tgggaaccttatcttgtgttcgtgagccagaagggcattccaattgagacttctcttcgg
gtttatcgcaggtatttgaagtatgatccttctcacattgaggattttattgaatttttg
cttaattcgagtctctggcaagaggcttctgagagtttggcttctgtcctcaatgatgac
cagttttactctattaagggtaagaccaagcaccggctttggttggagttatgtgatttg
atcactcgccatgccaatgaggtttctgggttgaatgtggacgctatcattaggggcggg
attaggaagttcactgatgaggtgggtaggctttggacttcgcttgctgagtattacatt
aggaggggtttgcatgagaaggctagggatgtgtttgaggagggtatgtctactgttatc
acggttagggattttagtgttatatttgattcttactcgcagtttgaagagagcatgttt
gcttacaagacggaggagatggggttgagtgatgaagaaattgatgagggtgaggaaaat
ggctttgaggaagtggaagaagaggatatttgtgtcaaaggaagattggtggacgaggat
tttgagaggaagattttgcatgggttttggttgaatgacaagaatgacatcgacttgagg
ttagctcggtttgattaccttatggagaggaggccggaattggctaacagcgtgcttttg
cgtcaaaatcctcataatgtagaacagtggcacaggagggtgaagctctttgaagggaat
cctaccaagcanatactgacttacactgaagcggtgaggacgattgatcccatgaaggca
gtgggaaagcctcacactttgtgggttgggtttgctaaattgtatgaaaagcacaaagat
cttgctaatgcccgtgtcatatttgaaaaggcagtgcagatgaactacaaaactgtcgat
aatctggctagtgtgtggtgtgagtgggctgaaatggagttgaagcagaaaaatgtcaaa
ggagcacttgagctgataagacgggctacagctgagccgtcagttgaggtgaagcgaaaa
gtggctgcgaatgggaatgaaccagtccagatgaagctacataaatccttgagattgtgg
acattttatgttgatttggaggaaagcttagattctttggaatctacacgtgctgtttat
gagcgaattttggatttaggaatagccacaccacaaataataatcaattatgcatacttt
ttggaggaacataaatactttgaagatgcttttaaagtttctgaaagaggagtaaagatc
tttaagtaccctcatgttaaagacatatgggttacttatctctctaaatttgtgaaaaga
tatggaaagaataaattggagcgagcaagagaattatttgaaaatgcagttgaatcggct
ccagctgatcaagtgaagccactttacctgcaatatgccaagctggaggaggactttggt
ctagctaaaagagctatgaaggtttatgatcaagcaaccaaggctgttcctaacaatgag
aagttaagcatgtatgagatatacatttctcgtgcagctgagatatttggtgtctccaag
acaagagagatctatgagcaggcaattgaatctggtctcacagataaggatgtcaaaagc
atgtgtttgaagtatgctgagctggaaaaaagcttgggtgaaattgaccgggcccgtgca
gtatatgtatttgcatctcagtatgcagattctgagttttggaataagtggcatgagttt
gaggttcagcatggaaatgaagatactttcagagaaatgcttcgtattaagcgaaacatc
tctttaagctacaaccaggcacattttattaaagatgttccttctgctgtgtttggtggt
ttgattagaaaaagagacgatgatgaaaataacggagaggtagatgctgcaaaagaaaat
cggcttggtgctcttgagagaataaagaggctaaaacgaaattaa
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