Vigna radiata (mung bean): 106777569
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Entry
106777569 CDS
T04126
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106777569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106777569
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
106777569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_14
TPR_8
TPR_19
TPR_17
ARM_TT21_C
TPR_12
TPR_9
TPR_7
BTAD
TPR-S
Motif
Other DBs
NCBI-GeneID:
106777569
NCBI-ProteinID:
XP_014520680
UniProt:
A0A1S3VQW0
LinkDB
All DBs
Position
11:104568..119238
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AA seq
1182 aa
AA seq
DB search
MDSETIRTQEEEGAEHLFQRLQESSDDASVHFDIGVFLWEKGGEGKEKAAEHFIQSAKLN
PKNGISFKYLGHYYANVSLDTQRAIKCYQRAVVLNPDDSESGEALCNLLDQGGNDSLEVV
VCREASEMSPRAFWAFRRLGFLQVHKKKWCEAVQSLQHALRGYPTCANLWEALGLAYQRL
GRFTAAIKSYGRAIELDDTMVFALVESGNISLTLGSFSKGVEQFRQALEISPQCVPAQYG
LALGLLGLAKDCINLGAYRWGASLLEEASEVARASAYFFRNFSCIWKLLADIQLAYARCY
PWIDDFLELESNKEAFSASINSWRRTCLFAARHAKFSYQRALHLSPWQANIYADIAVTSN
LINSLDKSYKQDINARMVAERMSMGALLLEGDNYEFWLALGCLSDHNALNQHALIRALQL
NVSLAVAWGYLGKLYRKADEKQLARQMFDRARSIDPGLALPWASMSVESCMSRELESDEA
FESCSRAVQIMPLAEFQLGLTKLALLSGHLSSSQVFGAIQQAVQHSPHYPESHNLYGLVC
EARNDYESAATFYRLARHAFNVGSWSIQNTHMRDISINLARTLSKAGNAIDALQECENLN
KEGALDEEGLQVYAFSLWQLGKNDLALTVARSLAATLSSMQRTSVATSICFICRLVYYIC
GLDAVITSIVKMPNDLFQSSKVSFVMSAIHALDGQNRLEFVVTGSRYFLKYYEEIAGMHL
LIALSKLVKNESDSLDIQSGVAHLKKAMHMFPNYSLIRNLLGYLLVTSKELNNYHVAMRC
CKLDHLDLSDKKGFKSAADIHGAGAVACYTTCNSSPKFTFPTCAKQCSNHPGAIRYLQKC
FHQKPWNHDARYLLVLNYLQRAREQKFPQHLCGILNRLTQAALSNELYSGTGLLFQYRYF
QLLLCASEVSLQCGNHMACITHAETASELLLPDDYLFFAHLLLCRVYAMKGDHPSFRKEY
MLCLELKTDYHIGWICLKLMECRYELQIDSNATDLNFEECVKRSGKLCDMWMAAYNLVRG
MVSFQKRDLFSAEEFMKHACSLAGFESCLFLCHGVICMELVRQCNDSQQFLSQAVKSLTR
VHELSLIPLPFVSVLVAQAEGSLGSKERWNRNLHLEWYSWPSEMRPAELYFQMHLLAREL
KVGPNFTSSMESSQSPMRWVIRAIHMNPSCMRYWKVLQKLME
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggattccgaaacaatcaggactcaggaggaagaaggggcggaacatctattccaacgc
ttgcaggagtcctcagatgacgcctccgtacattttgatattggtgtgttcttatgggaa
aaaggaggagaagggaaggaaaaagcggctgaacattttattcaatcggccaaattaaac
cctaagaatgggatatcttttaaatatctaggccattattacgccaacgtttcccttgac
actcagagagctattaagtgttaccaacgagctgttgttctcaatccggatgattctgag
tctggggaagctctgtgcaatttacttgaccaaggtggaaatgatagtttagaggtggtc
gtatgccgggaagcttctgaaatgtcaccgagagctttctgggctttccgaagattgggt
ttcttgcaggttcataaaaagaaatggtgtgaagctgttcagagtcttcaacatgccctt
agaggctatcctacatgtgctaatttgtgggaagctctgggtcttgcttatcagcggctg
ggcaggtttactgcagctataaagtcttatggccgtgcgattgagttggatgataccatg
gtttttgctttggttgaaagtggaaatatctctttgactcttggttcatttagcaaggga
gttgaacaatttcgacaagctttggagatttcaccacagtgcgtgcctgcacaatatgga
cttgctttggggctgcttggtttggcaaaagactgcatcaatctaggagcatatagatgg
ggggcttctctgttagaggaagcatctgaggttgcaagggcaagtgcttattttttcaga
aacttctcatgtatttggaaactacttgctgatattcagcttgcatatgctagatgctat
ccttggattgatgattttctagaattggaatctaataaggaagctttcagtgcctctata
aattcttggaggaggacctgcctttttgctgcaagacatgccaaattttcatatcaacga
gccttgcatttgtctccatggcaagcaaacatttatgctgacattgctgtaacttccaat
cttataaattcactagacaaaagttacaagcaagacataaatgcacggatggtggctgag
aggatgtctatgggagcattgctacttgaaggtgacaattatgagttctggctggcattg
ggatgtctgtctgatcataacgcactaaatcagcatgcattgatcagagcattgcaattg
aatgtatctctagctgttgcttggggataccttgggaagctatatcgtaaagctgatgaa
aagcaattggcaagacaaatgtttgatcgtgctagaagtattgatcctggacttgcattg
ccatgggcaagcatgtcagttgagtcttgtatgagtagggagcttgaatcagatgaggca
tttgagagctgttcacgtgctgtgcagataatgcctttagctgaattccaacttgggctc
actaagcttgctttgttgagtggacatctgtcatcttcacaggtttttggagctattcag
caggctgtgcagcattctcctcactatcctgaatcccataatttgtatgggctggtttgt
gaggctcgaaatgattatgagtctgctgctacattttataggttagcacgacatgcattt
aacgttggctcatggagtattcaaaacacacatatgcgggacatatcaatcaatttggcc
agaacactttctaaggcagggaatgcaattgatgctttgcaggaatgtgaaaatttgaat
aaagaaggggcacttgatgaagaaggtttacaagtatatgctttctctttgtggcaactt
ggtaaaaatgatttggctctcacggtagccagaagccttgctgcaactctgtcttctatg
caaaggacttctgtggcaacatccatttgtttcatttgtagattagtatactacatatgt
ggactggatgccgttatcactagcattgtgaaaatgccaaatgatctttttcaaagttca
aaagttagttttgtcatgtcagctatccatgctcttgatggacaaaatcgtcttgaattt
gttgtcactggtagccgatatttcctcaaatattacgaagaaattgctgggatgcacctt
ttaatagcacttagtaaattggtgaaaaatgagtctgatagccttgacattcagagtgga
gttgctcatctgaaaaaagctatgcacatgttccctaactatagtttgataaggaacctt
cttggctacctcttggtaaccagtaaagagctaaacaattatcatgtggcaatgaggtgc
tgtaaactggaccatcttgatctttctgataaaaaaggtttcaaatcagctgctgatatc
catggtgcaggagcagttgcttgctacaccacttgcaacagcagtccaaagttcactttt
ccaacttgtgcaaaacaatgttctaatcatcctggagctatcagatacctgcagaagtgc
tttcatcagaaaccatggaatcatgatgcccgctacttgcttgttcttaactatcttcag
agggcacgtgaacagaaatttcctcagcatctttgtggcatactaaatcgtttaactcaa
gcagctctttcaaatgaattgtatagtgggacaggattgttgttccaatatagatacttt
caacttctactttgtgcttctgaggtcagtttacaatgtgggaatcatatggcctgtatc
acccacgcagaaacagcttctgaacttttgcttcctgatgattatttattctttgcacat
ctactattatgccgtgtgtatgccatgaaaggtgatcatccaagttttcgaaaggaatat
atgttgtgtttggagctcaagacggattatcacatcggttggatctgtctcaaacttatg
gaatgtcgatatgagctgcaaattgattcaaatgccacagacttgaactttgaagaatgt
gtgaagagaagtggaaagttgtgcgatatgtggatggcagcatataacctagtgagagga
atggtttccttccagaagagggatttattctcagcagaagagttcatgaaacatgcttgt
tcattagcgggttttgagagttgcctctttctgtgtcatggtgtcatctgtatggaactt
gtccggcagtgcaatgactctcaacaattcctatcacaggctgtaaagagtcttacccga
gttcatgaactttcacttattcccttaccttttgtttcagtactagtcgcacaagcagaa
ggaagccttggttctaaagagaggtggaacagaaaccttcaccttgaatggtacagttgg
ccatcagaaatgaggcctgcggaactgtactttcaaatgcatttgcttgcaagggagttg
aaagtcgggccaaattttacatctagcatggagtccagtcagagtcctatgagatgggtt
attcgagcaattcacatgaacccttcttgtatgcgatattggaaggttttacagaagctt
atggaatag
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