Vreelandella sp. F11: ACFIOZ_00920
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Entry
ACFIOZ_00920 CDS
T11172
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vre Vreelandella sp. F11
Pathway
vre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACFIOZ_00920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vre03021
]
ACFIOZ_00920 (rpoB)
03400 DNA repair and recombination proteins [BR:
vre03400
]
ACFIOZ_00920 (rpoB)
Enzymes [BR:
vre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACFIOZ_00920 (rpoB)
Transcription machinery [BR:
vre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACFIOZ_00920 (rpoB)
DNA repair and recombination proteins [BR:
vre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACFIOZ_00920 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
XHN37927
LinkDB
All DBs
Position
196844..200920
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMNTEEILAEFFETSVFHIEKSG
FSVELVPSRLRGETATFDIKDGEGNVIVEEGRRITQKHIRQLEKAGLERLDVPMEYLFGK
TLAKDQIDSKTGELICPCNTEITPEVLERMAQGGITLVETLYTNDLDCGSFISDTLKLDA
TNSALEALVEIYRMMRPGEPPTKESAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDTDT
GSGVLDRKDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DRQLTDDIVHLSAIEEGDYIIAQASAAVDESNKLSDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVANRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
NVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGSEEITSDIPNVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIERTQLDE
VRKDLQETYRIAEDATFERLKRTLEGQAVNGGPNLKKGDVLDEAYLDELPRQQWFKLRLQ
DESYNELLAQADEQLETRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEAMLRDARGQQVAEIRDFLGQIYNTQGTRVEDLDSLSDDEIIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMALFDGRTGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacttgctggcgatccagcttgattcctattacgacttcctccag
caagatcgttcgcccgacgagcgtcacgaggtcggtctgcacgcggcattcaagtccgtg
tttccgattgagagcttctccggcaatgcagcgcttgagtatgtcagctaccgctttggt
acgccggcgttcgatgttaaggagtgccagctgcgcggcgtgacttactccgccccgctg
cgcgtcaaggttcgcttgatcatctatgatcgcgactcctcgaacaaagcaatcaaagat
atcaaagagcaagaagtctacatgggggaaatccccctgatgactgagaacggtaccttt
gtaatcaacggtactgagcgggtaatcgtgtcccagctccaccgctcgcccggtgtgttc
ttcgatcacgataaaggcaagagccactcttccggcaagctgctctactcagctcgcgta
attccttatcgtggctcctggttagacttcgagtttgaccccaaagacaacgtattcgta
cgtattgaccgtcgccgcaaactgccggcctcggtattgatgcgtgcgctgggtatgaac
accgaagagatcctcgccgagttctttgaaaccagcgtcttccacattgagaaatccggt
ttctctgtggagctggtaccgtcgcgcctgcgcggcgaaacggccactttcgacatcaag
gatggcgaaggcaatgtgatcgttgaagaggggcgtcggattacccagaagcacattcgt
cagcttgaaaaagctggccttgagcgtctggatgtgccgatggagtacctgttcggcaaa
accctggccaaagatcagattgattctaagaccggcgagctgatctgcccctgcaatacc
gagatcacgcctgaagtgcttgagcgtatggctcagggtggcattaccctggtggaaacg
ctctacactaacgatcttgactgcggttcctttatttccgacaccttgaagctggacgcg
acgaactccgcgcttgaagccctggtggaaatctaccgcatgatgcgccccggcgagccg
cccaccaaagagtctgccgagacgctgtttaacaacctgttcttctctgaggatcgctac
gacctctctggcgttggccgcatgaagttcaaccgtcgcctgcgtcgtgataccgacacg
ggctccggtgtgctggatcgcaaagacatcctcgacgtgctgcgcgaactgatcaatatt
cgtaacggcttcggtgacgttgacgatatcgatcacctgggtaaccgccgtattcgctgt
gttggcgagatggccgagaaccagttccgcgttggcctggtgcgggtagagcgcgcggta
aaagagcgtctctccatggccgaaagtgaaggtctgatgccccaagacttgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggttccagccagctttcccagtttatg
gatcagaacaacccgctttcggaagttacccacaagcgtcgtgtgtctgcactcggcccc
ggtggtttgacccgtgagcgcgctggcttcgaagtacgtgacgttcacgccacgcactac
gggcgtctatgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactccctg
gcgacttacagccacactaacagctacggcttccttgagacgccgtaccgtaaagtggtt
gaccgtcagttgactgacgatattgtgcatctgtcagcgattgaagagggcgactacatt
atcgcccaggcgtcagcagcggtggatgagtccaacaagctcagtgatgacctggttcag
gtacgtcaccgcggtgaaacgaccttcatgcgtcctgagcaggtgacgctgatggatgta
tctccacgtcaggttgtatctgttgcagcggcattgattccgttcctggagcacgatgac
gccaaccgcgccttgatgggttctaacatgcagcgtcaggcggtacctaccctgcgcgcc
gacaagccgctggtaggtacgggcatggagcgctttgttgcccgtgactccggtgtctgt
gcggtagcgaatcgtggtggggttatcgactcggtagacgctcgtcgtgtagtggtacgg
gttaatgaagatgaaatcatcggcggtgaagccggggttgatatctacaacctgaccaag
tacacccgctcgaaccagaacacctgtatgaaccagcgccccatcgtgcggcctggcgac
aacgtggcacgtggcgatattctcgccgacggcccgtcggtggatatgggcgacctggcg
ctaggccagaacatgcgcatcgcctttatgccctggaacggttacaacttcgaggactcg
atcctgctctccgagcgtgtcgttcaagaagatcgtttcactaccatccacattcaggaa
ctaacctgtgtgtctcgcgacaccaagttgggctcagaagagattacctctgatatcccc
aatgtgggcgagtccgcgctctccaaattggatgaagcgggcgttgtttacatcggtgct
gaagttggccccggggatattctggtcggtaaggtaacaccgaagggtgaaacccagctg
acgcccgaagagaagctgctacgtgccatcttcggcgagaaagcgtctgatgttaaagac
acctcgctgcgtgcccccaccggcatgaaaggcacggtcatcgacgttcaggtgtttacc
cgtgacggcgttgagaaggattcacgcgccctgtcaatcgagcgcacccagcttgacgag
gtacgtaaggatcttcaggagacctatcgtatcgctgaagatgccaccttcgagcgtcta
aagcgcacccttgaaggccaggccgttaacggcggcccgaacctcaagaaaggtgatgtg
ctcgacgaggcgtacctggatgagttgccgcgtcagcagtggttcaaactgcgcctgcag
gatgagtcctacaacgagctgctggctcaggccgacgaacagctggaaacccgtcgcaaa
gagatggacgagcgctttgaagataagaagcgcaagctgacccagggcgatgatctcgca
ccgggcgtgctaaaaatcgtcaaggtctacatggcggttaagcgtcgcatccagccgggc
gacaagatggctggtcgtcacggtaacaaaggtgttatctcagcgattatgcctatcgaa
gacatgccgtttgacgagaaaggcgagccggttgacgtggtgcttaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatccttgagactcacttgggtatggcggcacgtggc
ttgggcgtcaagatcgaagccatgctgcgcgatgcacgcggccagcaagtggccgagatt
cgtgacttcctggggcagatctacaatacgcaaggtacgcgtgttgaagaccttgactcc
ctgagcgacgacgaaatcatcgccctggcgaagaacctaaaaggcggtgtgccgatggca
acaccggtgtttgacggtgccaaagagcacgaaatcaagcacctgttgaagctggcggac
attccagaatcgggtcagatggccctgttcgatggccgtaccggtgacgcttttgaccgt
ccggtcaccgttggctacatgtacatgctgaagcttaaccacttggtagacgacaagatg
catgcgcgttctaccggttcttactcgctggttacccagcagcccttgggtggtaaggcg
caattcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagcttacggcgcc
gcatacacgctacaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtataaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactcgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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