Vreelandella sp. F11: ACFIOZ_01365
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Entry
ACFIOZ_01365 CDS
T11172
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
vre Vreelandella sp. F11
Pathway
vre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ACFIOZ_01365
09124 Replication and repair
03420 Nucleotide excision repair
ACFIOZ_01365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vre03021
]
ACFIOZ_01365
03036 Chromosome and associated proteins [BR:
vre03036
]
ACFIOZ_01365
03400 DNA repair and recombination proteins [BR:
vre03400
]
ACFIOZ_01365
Enzymes [BR:
vre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
ACFIOZ_01365
Transcription machinery [BR:
vre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
ACFIOZ_01365
Chromosome and associated proteins [BR:
vre03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
ACFIOZ_01365
DNA repair and recombination proteins [BR:
vre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
ACFIOZ_01365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
XHN38016
LinkDB
All DBs
Position
278752..281037
Genome browser
AA seq
761 aa
AA seq
DB search
MSATYRVAVRALCEFTAREGDLDHRFTPAPSAQEGIQGHTLVASRRGADYIAELPLSGIF
EGLTVTGRADGFDPTANRLEEVKTHRGSLERMADNQRALHWAQVKVYGALLCKERGLGHI
TLTLVYLEIASGKETLLSQEASAEELEVFFADQCQRFLAWAEQEAGHRLHRDSALHSLRF
PHTAFRSGQRELAEDVYKATSTGRCLLAQAPTGIGKTLGTLFPMLSAMPRQRLDRIAFLT
MKTPGRRLALDALATLRTRHDDEEALPLRVLELVAREKACEYPDRACHGESCPLAAGFYD
RLPAARQAAVAQQWLDRDALRDVALAHDVCPYYLGQELARWADVIVGDVNHWFDSHALLH
SLAQANDWRTGVLVDEAHNLVERARGMYSAELDQQRLSRLRRVAPKALSRPLGRLARQWQ
AVFKDAGVEDVGEPGKPVYRLLTTLPDKLVAAAQQVGAAITDHLGEHPEDATLELQELLF
ESLAFCRLAERFGDHSLCDLTRHGRGRALLGLRNLIPGDFLAPRFNTAHSVVLFSATLSP
AHYYRDLLGLPGNTVWQEVASPFAAHQLEVRVRSDISTRFRDREASVEPMVATMAQQYQR
KPGHYLAFFSSFAYLEAVLAKFREAHSEIAVFSQTRGMPEAQREAFLARFTPGGKGIGFA
VLGGAFAEGIDLPGDRLIGAFVATLGLPPFNDFNEALKARLSARFGQGDDYTYRIPGMIK
VVQAAGRVIRSPDDEGVVVLMDDRFAQTSVRALLPRWWSPG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgacctatcgcgtcgccgtgcgtgcgctgtgcgaattcaccgcccgtgaaggt
gatcttgatcaccgctttaccccagcccccagtgctcaggaaggtatacaaggacatacg
ctggtggctagccgacgcggggcagactatatcgccgaactgcccctgtcgggcatcttt
gaggggctgacggtgacggggcgtgccgatggctttgacccaacggccaaccgcttggaa
gaagtcaaaacccaccgcggcagccttgagcgcatggccgataaccagcgcgctctgcac
tgggcgcaggtaaaagtctacggcgcgctactctgcaaagagcgcggcctggggcacatc
accttaacgctggtgtacctagagatcgccagcggcaaggagaccctgctcagccaggaa
gccagcgccgaggaactggaggttttttttgccgaccagtgccagcgctttctcgcctgg
gcggagcaggaggccgggcatcgcctgcaccgcgacagcgccctacactctctgcgtttt
ccccacactgcgtttcgcagcggtcagcgcgaacttgccgaagacgtttataaagccacc
agcacaggacgctgcctgctcgctcaggcgcccaccgggattggcaaaacgctgggtacg
ctgtttcccatgctctcggccatgccgcggcaacggcttgatcggatcgcttttctgacc
atgaaaacccccggtcgccggttggcgctggatgccctggcgacgttgcgtacccgtcat
gacgatgaggaggcgttgccgcttcgcgtgttggaactggtagcgcgggagaaggcctgc
gaataccctgatcgcgcctgtcatggcgagtcctgcccgttagcggcgggcttctacgac
cgcctgcctgccgcccgccaagccgcggtggcgcagcagtggctggatcgcgacgcgctg
cgcgacgtggcgctggctcatgacgtgtgcccgtattacctgggccaggagctggcgcgc
tgggcggatgtgatcgttggcgacgttaaccactggttcgatagtcatgcgctgctgcac
agcttggcccaggcgaatgactggcgaacgggcgtgctggtcgacgaagcacataacctg
gtggagcgcgcccggggtatgtacagcgccgaactcgaccagcagcgcttgagccgactg
cggcgtgttgcccctaaagcgctctcccggccactggggcgcttggcccgccagtggcag
gcggtgttcaaagacgctggcgtggaagacgtcggcgaaccgggtaaacccgtctatcgg
ctgctgacgacgctacccgataagctggtagctgccgctcagcaagtgggcgctgcgatt
actgaccatctgggtgagcaccccgaggatgcgacgcttgagctccaggagctgctgttc
gagtcgctggcgttctgccgcttagcggagcgctttggggatcactcgctatgtgacctt
acccgccatggccgtgggcgggcgctgctggggcttcgcaatctgatacccggtgatttc
ctggccccgcggtttaacactgcccactcagtggtgctgttttctgccacgctctcaccc
gctcactactatcgagacctgctggggttgccgggtaatacggtgtggcaggaagtagcg
tcgccctttgctgcgcaccagcttgaagtgcgcgtacgcagcgatatttcgacgcgcttt
cgtgatcgggaggcgtccgttgagccgatggtggcgaccatggcgcagcagtatcagcgc
aagcccggccactatttagctttcttcagtagctttgcctatttagaggcggtgctggcg
aagtttcgcgaggcgcattctgagatagccgttttcagccagacccgcggaatgccggaa
gcccagcgcgaggcatttttggcgcgctttacgcccggtggaaaaggcatcggctttgcg
gtgttgggcggcgcctttgccgaagggatcgacctgcccggcgaccggctaatcggcgcc
tttgtcgccaccctgggcctgccaccgttcaatgacttcaacgaagcgctcaaggcgcgg
ctctccgcgcggttcggtcagggtgacgactacacctaccgcattcccggcatgattaaa
gtagtccaagccgccggccgggtgattcgcagtccagacgatgaaggcgttgtggtatta
atggatgatcgttttgcccagaccagcgtgcgtgcgctactgccacgctggtggtcgccg
ggctga
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