Vreelandella sp. F11: ACFIOZ_02640
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Entry
ACFIOZ_02640 CDS
T11172
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vre Vreelandella sp. F11
Pathway
vre03030
DNA replication
vre03430
Mismatch repair
vre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACFIOZ_02640 (dnaE)
03430 Mismatch repair
ACFIOZ_02640 (dnaE)
03440 Homologous recombination
ACFIOZ_02640 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vre03032
]
ACFIOZ_02640 (dnaE)
03400 DNA repair and recombination proteins [BR:
vre03400
]
ACFIOZ_02640 (dnaE)
Enzymes [BR:
vre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACFIOZ_02640 (dnaE)
DNA replication proteins [BR:
vre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACFIOZ_02640 (dnaE)
DNA repair and recombination proteins [BR:
vre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACFIOZ_02640 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
OB_POT1A
Motif
Other DBs
NCBI-ProteinID:
XHN38253
LinkDB
All DBs
Position
569593..573105
Genome browser
AA seq
1170 aa
AA seq
DB search
MTLPFVHLRLHSEYSLVDGLVKLKSLVSTTAERAMPALALTDEANLFGLVKFYKAAQGAG
LKPIIGSDLWLHNPHDESHPYRLTLLAMNDVGYRNLTELISKGWTHGQRQGRAILDKQWV
LEQSEGLIALSGAREGEIGRHLLSDHEQEARVLLEEWQAAFPDRFYLELVRTGRALEEAC
VHASVKLAIETGTPVVATNDVRFLERDDYWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPDEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFGIPEGMTQDEFFRKVSHDGL
TERLDFLFPAERYPRDSEEYRAIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
GVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFVGNDDEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGPLNIDSIPLDDS
PTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHELLKPVLAPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGK
KKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLRLTVTPPNVNVGGYKFTVDTDARVVYG
LGAIRGVGEGPIGAIVEAREADGPFKDIFDFCRRIDPKRMNKRTLEALIRSGALDTLGPN
RAVLFAAMEDALKAAAQNHTNQNLGILDMFGDAFAVDDESDGDSNVYAEYINAREWTDRE
RLSGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSRDPQRVAGLVVGVRTMKSKRG
DTMAFITLDDRTGRIEASLFGELFEQLRGQIEADQVLIVEGEVSSDEFSGGLRLRGKDVT
PMVAARIRYGQAVELALDAGQINGRLIETLRDSLTPYRDQEGLPVRLHYRHPEAVAWLEL
ADEWKVAPSDDLLLALQDVQGQAGVQLRYR
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgacacttccgttcgttcatttacgtttgcacagtgaatactccctggtcgatggctta
gtgaagctaaagtcgctggtcagcaccacggctgaacgggcgatgccagcgctggccttg
accgatgaagctaatctctttggtctggtgaaattttacaaagccgcccagggggcgggg
ctaaagccaatcattggcagcgatttatggctgcacaacccccacgacgagtcgcaccct
tatcggctaacgctgttggcgatgaatgacgttggctaccgcaacctgaccgagctgatc
tcgaaaggttggacccatggccagcgccaggggcgcgcgattctcgataaacagtgggtg
ctggagcagagcgagggcttgattgcactctccggtgcccgggagggcgagattggccgt
cacctgctgtctgatcacgaacaggaggcgcgggtactacttgaagagtggcaggcggca
tttccagaccggttttatctggagctggttcgcaccgggcgagcgttggaagaggcctgc
gttcacgccagcgtcaagctggccattgagacaggcacgccagtggtggcgaccaacgat
gtgcgctttcttgagcgtgacgattattgggcgcacgaaacccgcgtcgccatcggtgaa
ggtaaagcgctggacgacccgcgccgcgaacgccgctataccgaagagcagtacctaaaa
agccccgacgagatggcggcgctgtttgccgatatccccgaagcgctggaaaacagcgtg
atgatcgccgagcgctgcagcgtggatgtgcgcctgggcgagattttcctgcccgagttc
ggcattcccgaaggcatgactcaggacgagttctttcgtaaggtctcccatgacggttta
accgagcggttggattttctgtttcccgctgagcgctaccctcgcgacagtgaagagtac
cgggcaatcgaccagcgctaccgcgaccggctagagtttgagctcaacgttattatccag
atgggctttcctggctacttcctgatcgtaatggactttatccagtgggctaaagataac
ggtgtgccggttggtcccgggcgggggtctggtgctggttcgctggtggcctacgcacag
aagatcacggatttagacccgattggttacgacctgctgttcgagcgctttttgaaccct
gaacgtgtctcgatgcccgactttgacgtcgacttctgcatggagaaacgcgacaaagtg
attgagtacgtggccgagcgctacggacgtaacgcggtttctcagattgtcacttttggc
accatggcggccaaggcagtggtgcgtgacgtggcccgtgcccaggggcgcccctactcg
ttgggtgacaaactctccaaactgattccctttgaagtgggcatgaccctggccaaagcg
attgagcaggaacccgcgctcaaagagtttgtcggcaacgacgacgaagccgaagagatc
tgggagatggcgctcaagcttgagggcaccacccggggtaccggcaagcacgctgggggc
gtggttatcgcccccaccaaactgactgacttctccccgctgctctgcgatgaagatggc
tcgggtttagttgtacagttcgataaaaacgatattgaagaggccgggctggtcaagttt
gacttcctgggcctacgcacgctgacgattatcgactgggcgctggagatggtcgataaa
gtgcgcagtgttaatggtcaggggccgctcaatatcgacagcatcccgctggacgactcg
ccgaccttcgagatgctcaagcgcgctgagaccaccgcggtcttccagcttgaatcccgc
ggcatgaaggaactgatcaagcgcctgctgcccgactccctggacgacatgatcgccctg
gtggcgttgttccgcccaggccccttgcagtcgggcatggtcgatgactttatcaaccgt
aagcacgggcgggccgaagtctcttatccacacccggattaccagcacgagctgttgaaa
cctgtcttggcgcccacctacggcatcattctctaccaagagcaggtcatgcagatcgct
caggtaatggcgggttacagcctcggccaagccgatatgctgcgccgtgccatgggtaag
aaaaagcctgaggagatggccaagcagcgcgatggctttatggagggctgtgccgccaac
ggtatcgataaagacctggccggtaatatctttgacctggtagagaaattcgccggttac
ggctttaacaaatcgcactcggctgcctacgcgctggtctcttaccaaaccgcgtggctg
aaagctcactatccagggccctttatggccgccgttatgtccacggaaatggacaacctg
gataaagtggtaccgctgattgaggagtgccgcaacctccgcctcaccgtgacgccgccg
aacgtcaacgtgggtggctacaagttcaccgtcgataccgatgctcgggtggtctatggg
ctaggcgccattcgcggcgtcggtgagggccccattggcgctattgtcgaagcccgagag
gcagatggccctttcaaagatatctttgatttctgccgtcgcattgatcccaagcggatg
aataagcgtaccctggaagcgctgattcgctctggcgcgctggataccttaggccccaat
cgtgcggtgctgtttgcggcaatggaagacgcgcttaaagccgccgcgcagaaccatacc
aatcagaacctgggcatactggacatgtttggggatgcgttcgccgttgacgatgaaagc
gacggtgacagtaacgtttatgccgagtatatcaacgcccgtgagtggacggatcgcgaa
cgactttcaggggagaaagacaccctgggactctacctcacggggcacccaattgatgag
tacgagcgtgagttaaagcgctttgtgtctacccggatcagcgatctgaaaccctcccgc
gatccccagcgcgtggctggactcgtggtcggcgtgcgcaccatgaagtccaagcgtggc
gataccatggcatttatcaccctggatgatcgcaccgggcgtattgaagcctccctgttt
ggcgagctatttgagcaactgcgcggtcagattgaggcagaccaggtgttaatcgttgag
ggcgaggtctccagcgatgaattctctggtggtctacgcctgcgcggtaaagatgtcacg
ccgatggtggcggcgcgcattcgctatggccaggcagtggaactagcgctggacgcgggg
cagatcaatggtcgtttaattgaaaccctgcgcgacagcctgacgccgtatcgcgatcaa
gagggcttgccggtgcggctgcactatcgccacccggaggcagtggcttggctggaactc
gccgatgagtggaaagtggcaccgagcgacgacttactgctggcgctgcaggatgtccag
ggccaggcaggcgttcagctacgctatcgataa
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