Vreelandella sp. F11: ACFIOZ_02900
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Entry
ACFIOZ_02900 CDS
T11172
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vre Vreelandella sp. F11
Pathway
vre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFIOZ_02900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vre03019
]
ACFIOZ_02900
03400 DNA repair and recombination proteins [BR:
vre03400
]
ACFIOZ_02900
Enzymes [BR:
vre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACFIOZ_02900
Messenger RNA biogenesis [BR:
vre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACFIOZ_02900
DNA repair and recombination proteins [BR:
vre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACFIOZ_02900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
DACNV
TniB
Motif
Other DBs
NCBI-ProteinID:
XHN38305
LinkDB
All DBs
Position
628778..630772
Genome browser
AA seq
664 aa
AA seq
DB search
MTPTSAQQTLKDVFGFDDFRGGQQAVVTRVLDGHSTAAIFATGAGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLSFLIRHGVAAASIDSTQDRETTRDVMERAKSGELKILMISVERLK
NERFRHFLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPDYQRDFAIPQVLLLTATATPT
VIADMGEKFAIAPENVITTGFYRPNLELLVAPAMEDRQQQLIEWLKPQMQPGRAAPTIIY
VTLQQTAERVAKGLVAQGIAAQAYHAGLDSQRRDEIQRQFMGGESPCIVATIAFGMGIDK
GDIRNVVHYDLPKSIENYSQEIGRAGRDGLPSTCLTMAGRDGLRVLENFVYGDTPEYAGI
YRLLGEIAAAGNAPDRQWEVLLNTLSRDTNIRPLPLKTLLVRLEMQGIIAPRFAFLAEYR
LRYHIEPEALVDRFQGERAAFVRLLVDNIPIARTWGTVDFERLHSAGQAQQIDASRARVI
TALEYFQDKGWLTLEGKRMTDVYEVCYASFAIETLASQLYEDCLKRERVEIERLQAMLAL
FESESCLTRRLAEHFGDSTFNAPLQSEEGRCGHCSVCYGHPVKLPDAPPQPELTAADFQR
YATPLIERHTEQFGQPPNAQRLAHFLCGLTMPIFTPLKARSLNGFAVFEQRAYPEVRQWA
EAML
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgacccctacatcagcccagcaaacgctgaaagacgtattcggttttgacgactttcgt
ggcggccagcaggcggtggtgaccagggtgttggatggccactccacggcggcaattttt
gccactggtgcggggaagtcgctttgctaccagctcccggcgctgcatctgccgcatctc
accctggtggtgtcgccgctgctggcgctgatgcaggatcagctctcttttctaatccgc
catggcgtggctgccgccagcattgattccactcaagaccgcgaaacgacacgcgatgtc
atggagcgcgccaaaagcggtgagctgaaaatcctgatgatctcggtggagcggcttaag
aacgaacgttttcgccactttctacgccaggttcagatatcgctactggtagtcgatgaa
gcccactgcctctccgagtgggggcataatttccgccccgattacctcaagttgccggac
taccagcgcgacttcgctattccccaggtgctgctgcttaccgccacggcaacgccgacg
gtgattgccgatatgggtgagaagtttgctatcgcgcccgagaacgttatcactaccggc
ttttaccgccccaatcttgagctgctggtggcgcccgccatggaggatcgccaacagcag
ttgattgagtggctgaagccgcagatgcagccggggcgcgcagcaccaacgattatctat
gtcaccttgcagcaaaccgccgagcgagtggcgaaagggttggtggcccagggcattgcg
gcccaggcctaccacgccgggttagattcacaacggcgggatgagatccagcgccagttt
atgggcggtgagtcgccctgcattgtggcgactatcgcctttgggatgggcatcgataag
ggcgatattcgcaacgtggtgcactatgacctgcccaaatccatcgagaactacagccag
gagatcggacgggcgggtcgcgacggcctgccttccacctgcctgaccatggccgggcgg
gatggcctgcgggtgttggaaaacttcgtttacggtgatacccccgagtacgcaggcatc
tatcgcttgctgggagagatcgctgcggcgggcaatgcaccggatcgccagtgggaggtg
ctgctcaacacgctttcccgagataccaatatccgcccgctgccgctgaaaacgctgctg
gtgcggctggagatgcagggcattatcgccccgcgctttgcgtttctcgccgagtatcgg
ctgcgctatcacatcgaaccagaggccctggtggatcgctttcaaggcgagcgggcggcc
tttgtgcgtttgttggtcgataacattcccatcgcccgtacctggggaacggtggacttt
gagcgtttgcacagtgcggggcaggcccagcagatcgacgcttcccgtgcccgagtgatc
actgccctagagtactttcaggacaaaggctggctgaccctggaaggcaagcggatgacc
gatgtttacgaggtgtgttatgccagttttgctattgaaacgctggcgagccagctgtat
gaagactgcctaaagcgtgaacgtgttgagatcgagcggcttcaggccatgctggcgctg
tttgagtcggagagctgcctaacacggcggctggccgagcactttggcgatagcacgttt
aatgccccccttcagagtgaggagggccgctgtggccactgctcggtatgttacggccac
ccggtaaaactaccggatgcacctccacaacccgaattaacggcggctgattttcaacgc
tacgcaacgccgctgattgagcgccacaccgaacagtttggccagccacctaatgcacag
cggctggcgcacttcctgtgcggtttaaccatgccgatcttcaccccactcaaagcccgc
agtcttaatggcttcgcggtctttgagcagcgcgcctatcctgaagtgcgccagtgggcg
gaggcaatgctgtag
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