Vreelandella sp. F11: ACFIOZ_05290
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Entry
ACFIOZ_05290 CDS
T11172
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vre Vreelandella sp. F11
Pathway
vre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFIOZ_05290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vre03019
]
ACFIOZ_05290
03009 Ribosome biogenesis [BR:
vre03009
]
ACFIOZ_05290
Enzymes [BR:
vre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACFIOZ_05290
Messenger RNA biogenesis [BR:
vre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACFIOZ_05290
Ribosome biogenesis [BR:
vre03009
]
Prokaryotic type
rRNA helicases
ACFIOZ_05290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XHN38768
LinkDB
All DBs
Position
1186507..1188222
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AA seq
571 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVESQGYLVPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESSTTTGENIEQRIVRVDGGAKLEALS
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFHQRVIASLTKGAAEQRALIERLIEEGHDPI
ELTCAFAAMARADEAPIGRLQAPRKEKPSRDGASGGKPGARRERTGAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPATILTKMARARVAGRP
LEISEDSAPAERAPRRRRDEGDAPVRRRERA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatctagctcttttgcctgccgtt
ctgtctgctgtcgaatcacagggctacctcgtaccctcgccgattcaggcgcaaaccatc
cctgcgctgcttgaaggccgcgatatgttgggccaagcccagacgggtaccggcaaaact
gcagcgtttgcactgccgttactgtcacgtttagaactaactcgccgcgaaccgcaagtg
ttggtaatggcgccaacccgcgagcttgctcagcaagtagctgcctcgtttagtaagtat
ggtcaaaacctcaaaggtctcgaagttgcgactctatgtggtggccaagagtaccgtgaa
cagctgggcgcccttaagcgtggcgcgcaagtggttgtcggtaccccaggccggattatc
gatcacctggatcgcggcagtttgaagcttgatggcctctctgccctggtgctggatgaa
gctgatgaaatgttgcgcatgggctttatcgacgacgtaaaacgcgtggtcgccgatacc
ccgaaagatgcccagcgtgtgttcttctcagcgacactgcccactgaaattgagcgcatc
gttaaccgctacctggttaacccggtgaaagtcgccattgagtctagcaccacgaccggc
gaaaacatcgagcagcgcattgtgcgcgttgatggtggcgctaagctggaagccttgtca
cgtattctcgaagttgaacctgtcgatggggctatcgtttttgtgcgcacccgtgcggct
tgtaccaccttggttgagcagctaactgctcgtggcgttaacgccgctggcctgtccggt
gacctcgaccagagcctgcgcgagcgtactattacgcgcttgaagcgtggcaaagttgat
gtgctgatcgccactgacgtagcagcgcgtggtcttgacgtgtcgcgtattactcacgtt
atcaactacgatctgcctcaggatgcggaagcttacacgcaccgtatcggccgtactggt
cgtgcaggccgcagtggtatcgcaattacctttgctggcttccgtgaaggccgcaaagtg
ggctggatggagcaggcaaccggtcagaaaatgactgaaatgccgctacccgacgaagcc
gctatccgtgcccatcgcgatgacgtcttccaccagcgtgttattgcgtccttaacgaag
ggcgctgcagagcagcgtgctctgattgagcgtctcatcgaagagggccatgacccgatc
gaactgacctgtgcgtttgccgctatggcgcgtgctgatgaagcaccgattggtcgccta
caggcaccgcgcaaagagaagccctcacgtgatggtgcgtctggcggtaagccgggagca
cgtcgcgaacgcactggtgcgccgtctgaaggcatgacgcgctatcgcgtatcggttggt
cataaagatggtgtcaaacctggccaactagtcggtgccctcgctaacgaaggtggcatt
gaaggcgcacgtatcggtcgtatcgatattcgcaatgctttctctgtggtcgagttgccg
agtggtttacccgcaacgattctaaccaagatggcccgtgcccgtgtggccggtcgcccg
ttggaaatcagtgaagacagcgcaccggctgagcgcgctccgcgccgtcgtcgtgacgaa
ggcgatgcgcccgttcgtcgtcgcgaacgcgcctaa
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