Vreelandella sp. F11: ACFIOZ_06165
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Entry
ACFIOZ_06165 CDS
T11172
Name
(GenBank) sigma-54 interaction domain-containing protein
KO
K12146
hydrogenase-4 transcriptional activator
Organism
vre Vreelandella sp. F11
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vre03000
]
ACFIOZ_06165
Transcription factors [BR:
vre03000
]
Prokaryotic type
Helix-turn-helix
Other families
ACFIOZ_06165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS
PAS_9
PAS_8
PAS_4
AAA_5
AAA
Mg_chelatase
PAS_3
AAA_2
HTH_8
AAA_16
AAA_3
Motif
Other DBs
NCBI-ProteinID:
XHN38937
LinkDB
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Position
1359878..1361809
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AA seq
643 aa
AA seq
DB search
MGEHARTHTAALMGDFSPLAMIVIDPFVDQLLDANPAACEMLNIIQTLPLAAPFSHRLSA
SLPLWVSFTDEALTQKTAWSDDLVMLDMLRQPYRVEVYAQRVDDSSQLLLTLIDRNKAEQ
RRAKAELGRQHRQGEVGWQRVEQVFERIEKQNQLILGAAGEGIYGLDAEGKTTFVNPAAE
RILGWSTEDMVGHDAHLMFHHTHADGRHFPVQQCPIHASFSDGQVHHVDNEVFWHKNGEA
IPVEYTSTPIFEMGRLVGAVVLFRDIRERKRAEQQLRDALAEVESLKQRLELENEYLQEE
IKAELNHRDIVGNSPAVAKLIQQIELVAPTSANVLISGESGTGKELIARAIHAGSTRSDR
PLIRVNCAAIPRDLFESEFFGHVKGAFTGAVQDRPGRFELAHGGTLFLDEVGEIPLELQS
KLLRVLQDQQFERVGDNRTREVDVRVIAATNRELRDMIDNSHFREDLYFRLNVFPIESVP
LRKRIEDVPLLARHFLQRACLKFNKPGVRIPPSQLEILQRYPWPGNIRELENIIERQVIV
TQDRRLMFDDLLLGEPTRKIGRTNPISAAGHAGAEQNEVALLTEQALGQRQRESAIAALE
QAGGKVSGAGGAAELLGLKPTTLASRLNKWGIDTREFRKSAPH
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaacatgcacgtactcacaccgccgctctaatgggcgatttttcaccgcttgca
atgatcgtgattgatccgtttgtcgatcaactactggacgctaacccagctgcctgcgag
atgctcaatattattcaaacgctgcctttagcggccccgtttagccaccgcttgagtgct
tcactgccgctttgggtgagctttactgacgaggcgctgacacaaaagacggcctggtca
gatgatttggtaatgctggatatgctgcgtcagccgtatcgcgttgaggtttatgctcag
cgtgtcgacgactcttcgcagctgttattaacattgattgaccgcaacaaggccgagcag
cgccgtgccaaagccgagctaggccgccagcatcgtcagggggaggttggctggcagcgg
gttgagcaggtgtttgagcggattgagaagcagaaccagcttattctgggcgctgcgggg
gagggcatttacggcctggacgctgaaggcaaaaccactttcgttaatcccgcagcagaa
cgcattctgggctggagtaccgaggacatggtgggccacgatgcgcaccttatgttccac
cacacgcatgccgatggcaggcattttccggtgcagcagtgccctattcacgcctcgttt
agcgacggccaggtacatcacgtcgataatgaagtgttttggcacaaaaatggcgaagca
attcccgttgagtacaccagcacaccgatattcgagatgggacgattggtcggggcggtg
gtgctgtttcgtgatattcgcgagcgtaagcgcgctgagcagcagctacgcgatgccctt
gctgaggtggagtcactcaagcaacgtttggaattggaaaatgagtaccttcaagaagag
ataaaagcggagctgaatcatcgtgatattgtcggcaacagcccggcggtggccaagctg
atccagcagattgagttggtggcgcccaccagtgccaacgtgttgattagcggcgagtcg
ggcaccggcaaagagctgattgctcgcgctattcatgccgggagcacgcgcagcgaccga
ccgctaatccgcgtgaactgcgcggctattccacgtgacctgtttgagagcgaattcttt
ggtcacgtaaaaggggcttttaccggcgcggtacaagatcgcccagggcgctttgagctt
gctcacggtggcactctatttttggatgaagtcggcgaaatccctctggagctgcagagc
aagctgttgcgagtgctgcaggatcagcagtttgagcgcgtgggcgataatcgtacccgc
gaagtggatgtgcgagtgatcgcagcaaccaatcgcgaactgcgcgatatgatcgataac
agccattttcgcgaagatctctattttcgtctcaacgtgttccccattgagtcggttccg
ctacgcaagcgaattgaggatgtgccgctgttggcgcggcacttcttacagcgcgcctgc
ctgaaatttaataagccaggggtgcgtattccgccgtcccagctggagatcctgcagcgc
tatccctggccgggcaatatccgtgaactggagaacatcattgagcggcaagttatcgtg
acccaggatcggcgtttgatgtttgatgacctgctgctgggagagcccacacgcaagata
ggtcgcactaaccccatctctgcagcgggtcatgccggtgcagagcagaatgaagtagcg
ctgcttaccgagcaagcgcttggccagcgtcagcgggagagcgcgattgccgctctggag
caagccggagggaaagtctctggggcagggggcgcggcggagctgcttggcctcaagccc
actacgctggcttcgcggctaaataagtggggcatcgacacgcgagaatttcgcaaaagc
gcgccgcattaa
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