Vreelandella sp. F11: ACFIOZ_08650
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Entry
ACFIOZ_08650 CDS
T11172
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vre Vreelandella sp. F11
Pathway
vre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFIOZ_08650 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vre03019
]
ACFIOZ_08650 (rne)
03009 Ribosome biogenesis [BR:
vre03009
]
ACFIOZ_08650 (rne)
Enzymes [BR:
vre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACFIOZ_08650 (rne)
Messenger RNA biogenesis [BR:
vre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACFIOZ_08650 (rne)
Ribosome biogenesis [BR:
vre03009
]
Prokaryotic type
rRNA processing factors
ACFIOZ_08650 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XHN39406
LinkDB
All DBs
Position
complement(1916352..1919795)
Genome browser
AA seq
1147 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDY
GADRHGFLPLKEISKEYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFVSL
AGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLTVPDKMGLIVRTAGIGRNPEELQW
DLDYLVQVWESITTEAAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHY
DVQRLRDDHLDEDDTQSLSSFELSTDTEIGKEPTPSFVPPAQRAEAAVKSVTHNAPAPAS
LQTEEKAPVAAPAAKPAPVASEQPSVIGRFIRGFAKLLGSDENSTEAAPEPKAETPAPRK
SSERRPSQRSNESRQRPSRGDSNVRPEAKAEPKAEQNAEQKTEQRSSAPRPASDDNGDKR
SGPSRTRNRRRHPQQEDANGQEVANKAPRKETKADSSSKESSKESGSGKNAAQKESRRDN
SGDKNRDTQRDEAAKSSEAKTPEAKQDDGKPKRTRNNPRNRTRTKAINPQAEAEQLKLQA
EAQNEVPAATPEPKGVSATEEANAASQDAAAAPAAERSDAHTAQPEVAADDAPESSAKSE
SETQLDPEAKVGSETKLDSEAKPEAEQAGDATTADQPAAVNAKARKSTHQRRQPKAAPQA
EQSDTAGQNEDTAKPSEPEATATNAQAAPSEANSETAEENAEPTDAKLTGDDSQPMTSES
VAPDSIAPPAANAADTSTTIGEAASPAPFNSRDTEQSSGQHQPEAATKAQETSQEAATPS
AVGSAAPAVEEPSSSEPTQDAAEKGDEPKHVEAKHVEESVVKESSVELDSAETTTEKSSD
EPAATDHTVAEAPVTQADAQPVPPVASEAPSEDAAGEETPKPRRRRSRAHNDPREKRKQA
QQDNRSE
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttattaatgcgacccagcccgaagagctgcgcgtcgctttagttgat
ggacaacgcctctacgatctggatatcgaatccggcgcgcgagaacagaaaaaagccaac
atctatcgcggtaaaatcacccgcgtagagccctcgcttgaagctgccttcgtcgattac
ggcgctgaccgccacggttttttgccgctcaaagagatctctaaagagtactttgtgaaa
gatgtctctggacgtccaagcattaaagaagtgctcaaagagggccaagaggtcatcgtt
caggtcgataaggaagagcgtggcaataaaggcgccgcgttgacaacctttgttagtctg
gcgggtcgctttttggtgctaatgcccaacaatcctcgggctggcggtatttctcgccgt
atcgaaggcgacgagcgcagccagctcaaagatgccatgggtcagctgaccgtaccggat
aaaatgggcctgatcgtgcgcactgcgggcatcggccgcaacccggaagagctgcagtgg
gacttggattacctggttcaggtgtgggaatcgatcaccaccgaagccgccaagcgccct
gccccgtttttgatctaccgggaatccaacgtcatcattcgcgccatgcgcgactacctg
cgccaggacatcggcgaagtcttgatcgacagccccgagattcacgccgaagcgttgggc
tttattcgccaggtgatgccgtcgtatcagcagaaaatcaagctctacgcagacgaagta
ccgctattttcacgcttccagatcgagtcgcaaatcgaaaccgcctaccagcgtgaagtg
aagcttccctcaggtggctcgatcgtgatcgatcacactgaagcactggtctccatcgat
attaactccgcccgcgccacccgcggtagcgatattgaagagaccgccctgcagaccaac
tccgaagccgccgatgagatcgcccgccagttgcgcctgcgcgatatcggcggtttagtc
gtgatcgactttatcgacatgggccctgcgcgcaaccagcgggaagtcgaaaaccgcatg
cgcgatgccctcaagctggatcgcgcccgggttcagatcggccgtatttcacgcttcggc
ctaatggaaatgtcccgccaacgcctgcgtccttcgctgggtgaaaccagcggcgtggtc
tgcccgcgctgtaatggccagggcaccattcgcgatgtgcgttcgctgtcgctctccatc
atgcgcctgattgaagaagaggccatgaaagagaatagcgcgcaaattcgcgccatcctg
ccggtacccgtggcgacttacctgctcaatgaaaaacgcagcgtgctggctgatcttgag
tctcgccagaatgtgcgtgtcgtactgctgcccaatccggatatggatacgcctcactac
gacgtacagcgcctgcgtgatgatcacttggacgaggacgacactcaaagcctatcgagc
tttgagctctccaccgatactgaaataggcaaagaaccgacgcccagctttgtgccaccc
gctcaacgggccgaagccgccgtcaagagtgtcacccataacgcccctgcgcccgcatcg
ctgcaaacggaagagaaggcgcctgtagctgccccggcggctaagccagcaccggtagcg
agcgagcagcctagcgtcatcggtcgctttatccgtggtttcgcaaaactgctgggtagc
gacgaaaatagtactgaggccgccccagagcccaaggctgaaaccccagcaccacgcaaa
tcgagcgaacgtagaccctctcagcgcagcaacgagtcgcggcagaggccttcacgcggc
gatagcaacgtccgtcctgaggcaaaagccgaaccaaaagctgaacaaaacgctgaacaa
aaaaccgagcagcgcagtagcgccccgcgtcctgccagtgacgataatggcgataagcgc
agcggccctagccgcacccgcaaccgccgtcgccacccccagcaggaggatgcgaacggt
caagaagtagctaacaaagcacctcgtaaagagactaaagctgacagctcttccaaagag
agctctaaagagagcggcagtggcaaaaacgcagctcagaaagagtcacgtcgggataac
agtggtgataaaaaccgcgacactcagcgcgatgaagcggccaaaagctcagaggctaaa
accccagaagcgaagcaagacgacggcaagccaaagcgtacccgtaacaacccgcgtaac
cgcacgcgcaccaaggcgatcaacccccaggctgaagccgagcagttaaagctgcaggcc
gaggcacaaaatgaagtgccagcagcaacgccagagccgaaaggggtctctgctacagaa
gaggctaacgccgcctctcaggatgcagcagcagccccggcagcggagaggtcggatgcc
cataccgctcagccagaagtggcggcagacgatgcacctgagtcaagcgccaagagtgag
tcggaaacccaattagaccctgaggccaaggtaggctctgagactaagttagactctgaa
gccaagccagaggctgagcaagcgggcgacgcaacgaccgccgaccagccagcggcagtg
aacgccaaagcgcgtaaatcgacgcaccagcgccgtcagccgaaagcggccccccaagcg
gaacagtccgacaccgctgggcagaatgaagatactgccaagccgagcgaaccggaggcc
acagcgaccaatgcgcaggcagcaccgtcagaggcaaactcagaaacagccgaggagaac
gctgaaccaactgacgccaagctaacgggtgatgatagccagccaatgactagcgagtcg
gtagcgccagactccatcgcaccgcctgcggccaacgctgccgatacatcaacaacgatt
ggagaggccgcttcccctgcacctttcaatagtcgggatacagagcaaagcagcggccag
catcagcccgaagcagcaacgaaggctcaggaaaccagccaggaagcagcaacgcccagc
gctgttggatctgctgcccctgcggttgaagagccctctagcagcgaaccgacgcaagac
gcagcagaaaaaggtgatgagccaaagcacgttgaagcaaagcacgttgaagagagtgtc
gttaaagagagtagcgttgaactggatagcgctgaaactaccactgaaaagagtagcgac
gagccagcagcgactgaccacactgtggcagaagcccctgtaactcaagcagacgctcag
cccgttccgccggtcgccagtgaagcgccaagtgaagatgccgcaggcgaagaaacgcct
aaaccgcgacgtcgtcgctctcgggctcacaacgatccgcgcgagaagcgtaaacaggcg
caacaagacaaccgctcggaatag
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