Vreelandella sp. F11: ACFIOZ_11765
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Entry
ACFIOZ_11765 CDS
T11172
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vre Vreelandella sp. F11
Pathway
vre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFIOZ_11765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vre03019
]
ACFIOZ_11765
Enzymes [BR:
vre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACFIOZ_11765
Messenger RNA biogenesis [BR:
vre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACFIOZ_11765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
UvrD-helicase
AAA_22
Sacchrp_dh_NADP
Gag_p24
COMPASS-Shg1
HI1480
Motif
Other DBs
NCBI-ProteinID:
XHN35778
LinkDB
All DBs
Position
2580555..2581814
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AA seq
419 aa
AA seq
DB search
MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLNNTGKRPGKRQVRALVLTPTRELAAQVGESVSSYGQHLALRSHIIFGGVGQQPQIDA
LKAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKR
QNLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQ
QHGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVA
TDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSDGEAVSLVCVDEDALLGNIE
RLIKQKLPKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGERKRRARR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggcctgcacgccgatttgttacgcgctgtcacagcgcaaggt
tacactgagcctaccccgatacaacgacaggctattcccgttgtacttgaaggccgtgac
atgctggccagcgcccaaaccggcacgggtaaaaccgctggttttacgctgccaatgctg
caacgcctgaataatacaggcaagcgtcctgggaaacgtcaggtacgtgcactggtacta
acccctacacgagagcttgccgctcaggtgggcgaaagcgtgtcgagctatggccaacat
ctggcactccgctcccacattatttttggtggcgtcggccaacagcctcaaatcgatgcc
ctaaaagccggtttggatgtattggttgccaccccaggacgcctgctggatctccaccag
caggggcacgtggatctctcctgcgttgagattttagtgctcgatgaagctgaccgcatg
ctggatatgggcttcattcacgacattaaacgcttgctgcgcctggtgcctaaaaagcgc
caaaacctgctgttctcagcgacattctcaaatgagattcagaccctggcgcaacagctg
ctggataatccggcgatgattgaagtagcaccgcgtaatgcgactgccgataaaattgag
caggccatttaccgtgttgatcgcgagaagaaacgcgagctgctagcccacttaattcag
caacacggctggttccaggtactggtatttacgcgcaccaagcatggcgcgaatcgcctt
gccgagcagctctccaagcaggacatcccttccatggcgatccatggcaataaaagccag
ggagctcgcacccgcgcgctaacggcatttaaaagcggtgatctacaggtactcgtggcc
accgatatcgctgctcgtggattggatatcaatgagctgcctcacgtggttaatttcgat
ctacccaacgtggcggaagattatgttcaccgcattggccgcaccggtcgtgctggcagc
gatggcgaagccgtttcattggtgtgtgtcgatgaagacgccctgctgggcaatattgaa
cggctaatcaaacagaagctaccaaagcatattgaacctggctttgagcccgaccccagc
atcaaacctgagcccattgagaatggccgacgcaatcaacgtcagccacgcgccaaacgc
aaacctgaaggtcagagtgccaacaccggcggcgaacgtaaacgccgcgcgcggcgctag
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