Veillonella rogosae: OKW85_04415
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Entry
OKW85_04415 CDS
T08601
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vrg
Veillonella rogosae
Pathway
vrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OKW85_04415 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vrg03019
]
OKW85_04415 (rnr)
03016 Transfer RNA biogenesis [BR:
vrg03016
]
OKW85_04415 (rnr)
Enzymes [BR:
vrg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OKW85_04415 (rnr)
Messenger RNA biogenesis [BR:
vrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OKW85_04415 (rnr)
Transfer RNA biogenesis [BR:
vrg03016
]
Prokaryotic type
tRNA degradation factors
OKW85_04415 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
S1_RRP5
OB_HELZ2
CSN8_PSD8_EIF3K
CSD
Motif
Other DBs
NCBI-ProteinID:
UZG51847
UniProt:
A0AA46X4I3
LinkDB
All DBs
Position
987134..989497
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AA seq
787 aa
AA seq
DB search
MKKKVLDFYKSIQPHAYHIEDAAMDNHIRGGKDLEMFIRSAKMLAREGVLTCTRPDVYQY
EEQQHEEYEGIYKGYRKSYGFVIMLDDEDIYVAEQNKGTAMHNDKVRVRVVPSDYTKHKR
EGIIVDVIERANETVVGTYDRQQHFGFVIPDDERIGTDIFVDLKNTLDARSGAKVLVKIT
KWPEGDKKPEGVITKILGYKGDVGLDINCIMANHKIPFAFPDEVIKASKKIDTVIHEDPK
RWDLRDLQMVTIDGEDAKDLDDAVSGRKLPNGNYELGVHIADVSHYVTSGQPIDNEAYKR
GTSVYLVDRVVPMLPEVLSNGICSLNAHEDRYAMTCMMEIDDSGTVVNYRIRPSIIHVGR
RCSYKEVYKALEENIIPDDLQDFMPMLRDLAEISKILNRMRRRRGALDFDFPEYKVLLDL
DGTPLRIVKRDRTMAERLIEECMLIANETVATHLKNTHRTSVYRIHESPSEEKLDLFQKV
LNYLGQNLVLCADGVTPRDFQKILDVVKGQDIEQVAQIMTLRSMQQAKYSIENAGHFGLA
STCYTHFTSPIRRYPDLMVHRLLKADMHWKNGYSKRDVEDAFLAGAVEHSSIQEQVATEA
ERETTDLKKTQYMVPFVGEVFEGRIASITSFGMFVELENGIDGLVHISMMNDDYYFFDEE
HFVLIGKRTGKTYHLGDKVTVTLVKADVEKKQIDFVLGEVDNLMAIQEQLRNGSDYASSR
DSFGSRKDRKSSSKRGKKSSRRDDNKTGHSRYDAFSKKSGKGKSSRKKSNKSTKRSQSKK
SKSKRKR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaaaaagtattggacttttataaatctatccaaccacatgcatatcatatagaa
gatgcagcaatggataatcatattagaggtggtaaggacctagaaatgtttattcggtct
gctaaaatgcttgctcgggaaggtgtattaacttgtacgcgacctgatgtatatcaatat
gaagagcaacagcatgaagaatatgaaggtatttacaaaggatatcgtaaatcttacggc
tttgttatcatgctcgatgatgaagatatttatgtggctgaacaaaacaaaggcactgcc
atgcataatgacaaagtgcgtgttcgcgtagtgccatctgactatacaaaacataaacgg
gaaggcattattgttgatgttattgaacgtgctaatgaaactgtagttggcacctatgat
agacaacaacactttggctttgttatccctgatgatgagcgaatcggtacagatatcttt
gtagatttaaaaaataccttagatgctcgtagtggcgcaaaggtattagtgaaaattact
aaatggcctgaaggcgataaaaagccagaaggtgtaattactaaaattcttggctataag
ggcgatgtaggccttgatattaactgcatcatggcgaatcataagattccttttgctttc
ccagatgaagttattaaggctagtaagaaaatcgatactgttatccatgaagacccaaaa
cgttgggaccttcgggacttacaaatggtcactatcgatggtgaagatgcaaaagatctt
gatgatgctgttagtggtcgtaaattaccaaatggcaattacgaattaggtgtacatatt
gcagacgtaagccactatgtaacatctggccagcctattgataatgaagcttataagcga
ggtacatctgtttatttagtagaccgtgtagtaccgatgttacctgaggtattatcaaat
ggtatttgtagcttaaatgctcatgaagaccgttatgctatgacctgtatgatggaaatt
gatgattctggtactgtcgttaattatcgtattagaccatctattatccatgttggacga
cgttgtagttataaagaagtatataaagcactagaagaaaacatcattcccgatgattta
caagactttatgcctatgttacgggacttagcagagatttcgaaaattttaaatcgcatg
cgccgtcgtagaggtgctttagactttgatttccctgaatataaggttttgcttgaccta
gatggcacgccgttacgtatcgttaaacgggatcgtacaatggcagagcgccttatcgaa
gaatgtatgcttatcgctaatgaaacggtagcgactcatttgaaaaatacacatcgcact
tcggtatatcgtattcatgaaagtccaagtgaagaaaagttagatttattccaaaaggta
ctaaattacttaggtcaaaatctcgttctttgtgccgatggcgtaacacctcgagatttc
caaaaaatcttagacgtggtgaaggggcaggatattgagcaagtagctcagattatgacc
ttacgatctatgcaacaagcaaaatacagcatagaaaatgcaggacactttggtttagca
tctacatgttatacccattttacatctccaatccgacgttatccagatttgatggttcat
cgtcttttaaaagcagatatgcattggaaaaatggatattccaagcgagatgtagaggat
gcttttttagctggtgctgttgaacattcctctattcaagagcaagtggcaacagaggct
gaacgagaaactacagaccttaaaaagactcaatatatggttccattcgttggcgaagtc
tttgaaggccgtattgcaagtattacatcctttggtatgtttgttgagttagaaaacggt
atcgatggcctcgtgcatattagcatgatgaacgatgattactatttctttgacgaagaa
cattttgttctcattggcaaacgtacaggtaaaacatatcatctaggtgataaggttact
gttacccttgtaaaagccgatgtagaaaagaaacaaattgactttgttctaggtgaagta
gataatttgatggctatccaagaacaattgcgcaatggttccgattatgcttctagtcga
gatagctttggtagtcgtaaagatcgaaaatcctcaagtaagagagggaaaaaatcttca
cgacgcgatgacaataaaactggtcattctcgttatgatgctttcagtaaaaaatctgga
aaaggcaaatcaagccgtaagaagtcaaataaatccacaaaacgtagtcaatctaagaaa
tctaaaagtaaacgtaaacgatag
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