Veillonella rogosae: OKW85_09280
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Entry
OKW85_09280 CDS
T08601
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vrg
Veillonella rogosae
Pathway
vrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OKW85_09280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vrg03019
]
OKW85_09280
Messenger RNA biogenesis [BR:
vrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OKW85_09280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UZG50869
UniProt:
A0AA46X4P7
LinkDB
All DBs
Position
complement(1991395..1993581)
Genome browser
AA seq
728 aa
AA seq
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MLNKIMNKILGGTVNTTDNQVTAQVKAEPTVARNATRAAAAEGEQKQTRRRTNTRRPADE
GRTRQQAAGEGEGTTRQRRTNTRTNANGGRTNTTRRTNTRRNAEQGEGQERTERKPRQTR
APRGERSENTRNTRTNNTGRNGQNGQNRNNNRPNNRSTNRNHQEEHVELVGRTPNGANKG
KFQIIPLGGLGEIGKNMTIFQYEDEIIVLDSGLAFPSEDMLGVDIVIPDMSYIIENKDRV
KAVVITHGHEDHIGSLAYLMKEINCPVYATNLVCGLIEGKFKEHKVSPKCLRTIAAGDEV
QIGSVNVGFIQTNHSIPDSCAVYFDTPIGTVLHTGDFKIDQTPVDGRLMDMHKFAELGNK
GVLALMSDSTNVEKPGTTGSESSVGPAIKQAVGEAKGRVVLATFASNVSRIQQAVDAAVM
FNRKVVVMGRSMVNVTEIAQERGYLNIPPNTIIDVDVMHNYTDDQIMILTTGSQGEPMAG
LSRMATSNHRTVELAPNDTVIISATPIPGNEGAVGRTIDNLLRLGCNVVYGKDRGIHVSG
HASQEELKTMLNLVRPEYFIPVHGEYRMLRRHGELGVAMGVDPKKVLIGDNGQIFEFDKD
GGRKGGRVQAGAIFVDGLGVGDVGNIVIRDRQQLAQEGMVIVVMAMDKASGTIVAGPDLV
SRGFVYVRDAEELMLAAERRVEQVLDDCEVQRIKDWTTIKQNVRDALGKFFYDKTRRRPM
ILPIIQDV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgttaaataaaataatgaacaaaattttaggaggaactgtgaatacaacagataatcag
gttactgcgcaagtgaaagcagaaccgacagtagcaagaaatgctactcgtgcagctgcg
gctgaaggcgaacaaaaacagactcgtcgccgcactaatacacgccgtcctgctgacgaa
ggtcgtactcgtcaacaagcagctggtgaaggtgaaggcacaacacgtcaacgccgtaca
aatactcgtacaaatgcaaatggtggtcgtactaatacgacacgccgtacaaatactcgt
cgcaatgccgagcaaggtgaaggtcaagaacgtacagaacgtaaaccacgccaaactcgt
gcaccacgcggtgaacgtagtgaaaatacgcgcaacacgcgtactaataatactggtcgc
aatggccaaaatggtcaaaaccgtaacaacaaccgtccaaataaccgttccacgaaccgc
aatcatcaagaggaacacgtggaattagtaggtcgtacaccaaatggcgctaacaagggt
aaattccaaatcatccctcttggcggtcttggtgaaatcggtaaaaacatgaccatcttc
caatatgaggacgaaatcattgttctcgactctggtcttgcgttccctagtgaagacatg
cttggcgtagatatcgttattcctgatatgagctatatcatcgagaataaggatcgcgtg
aaagctgtcgtaattactcatggtcatgaggaccatatcggttccttggcataccttatg
aaagaaattaactgcccagtatatgcaacaaacctcgtttgtggcttgattgaaggcaag
ttcaaagaacataaggtatctccaaaatgtcttcgtacgattgctgcaggcgatgaagtt
caaattggttctgtaaatgttggtttcatccaaacaaaccactccatccctgattcctgc
gctgtgtacttcgatacaccaatcggtactgtacttcatacaggggactttaaaatcgac
caaacgccagttgatggccgtttgatggatatgcacaaatttgctgagctcggtaacaaa
ggcgtattagcgttgatgtccgactctacaaacgttgaaaaaccaggcactacaggttct
gaaagctctgtaggccctgctattaaacaagctgttggcgaagcaaaaggccgcgttgtt
ttggcaacatttgcatctaacgtatctcgtattcaacaagctgttgatgcggcagttatg
ttcaaccgtaaggttgtcgttatgggccgcagcatggtaaatgttacagaaatcgcacaa
gaacgcggttacttaaacattccgccaaatacaatcatcgacgtagatgtaatgcacaac
tacacagatgaccaaattatgatcttaacaactggttctcaaggtgaaccgatggcaggc
ttgtcccgtatggctacaagcaaccaccgcactgtagaattggcaccgaatgacacagtt
atcatctctgctacaccaattccaggtaacgaaggtgctgtaggtagaactatcgataac
ttgcttcgtttaggttgtaatgtagtctacggtaaagaccgtggcatccacgtatctggc
catgcgagtcaagaagagcttaaaacgatgctcaaccttgttcgcccagaatacttcatt
ccagttcatggtgagtaccgcatgttgcgccgtcatggtgaacttggtgttgctatgggc
gtagatcctaagaaagtccttatcggcgataatggtcaaatctttgaatttgataaagat
ggtggacgtaaaggtggccgtgtacaagctggcgctatcttcgttgatggccttggcgtt
ggcgacgtaggtaacatcgttattcgtgaccgtcaacaattggcacaagaaggtatggtt
atcgttgtaatggcgatggacaaagcttctggtacaatcgtagctggtccagacctcgta
tctcgtggcttcgtatacgtacgcgatgcagaagagctcatgcttgctgcagaacgtagg
gtagaacaagttcttgatgattgcgaagtgcaacgcattaaagactggactactattaag
caaaacgtacgtgacgcgttgggtaaattcttctacgataaaacacgccgccgtcctatg
atcttgccgattattcaagacgtataa
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