Vitis riparia (riverbank grape): 117903999
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Entry
117903999 CDS
T07274
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03030
DNA replication
vri03420
Nucleotide excision repair
vri03430
Mismatch repair
vri03440
Homologous recombination
vri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117903999
03420 Nucleotide excision repair
117903999
03430 Mismatch repair
117903999
03440 Homologous recombination
117903999
03460 Fanconi anemia pathway
117903999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vri03000
]
117903999
03032 DNA replication proteins [BR:
vri03032
]
117903999
03400 DNA repair and recombination proteins [BR:
vri03400
]
117903999
Transcription factors [BR:
vri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117903999
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117903999
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117903999
MMR (mismatch excision repair)
117903999
DSBR (double strand breaks repair)
HR (homologous recombination)
117903999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
117903999
NCBI-ProteinID:
XP_034672422
LinkDB
All DBs
Position
17:complement(11339651..11344443)
Genome browser
AA seq
625 aa
AA seq
DB search
MAKSITPDGISTILSNPSPDSSSELPEIIVQVIDLTPIGNRYKFTANDGKMKLKAMFPSS
FSSEINSGNIQNLGLIQVIDYTLNDIPSKQEKYLIVTKCEAVSPALEVEFKTEVKSEETG
ILLRPKQVAEIQSEVKTEGTGIFLKPKQEIVAKSAAQIVNEQHGNMAPAARMAMTRRVHP
LVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF
YEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVE
IEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWND
HATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDS
EGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTGNPSLGEDKPSFFSIRAYVSFIKP
DQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNE
QAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITAR
AVVPVDFAAESRLLLEEISKMKTSQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatccattaccccagatggcatttccactattctctcaaacccatctccggat
tcctcctcagaactcccagaaatcatcgttcaagtcatagatctcacgccaatcggaaac
agatataaatttacagcaaatgatggaaagatgaagctcaaagcaatgtttccatccagt
ttttcatctgagataaactctggaaatattcaaaaccttggtctcattcaagttattgat
tacaccctcaatgacattccgagcaagcaagagaaatatttgattgtgacaaaatgtgag
gctgtctctcctgcacttgaagtggaattcaagactgaggtgaaaagtgaagaaactgga
atcctgttaaggccgaaacaagtagctgagattcagagtgaggtgaaaacggaaggaact
ggcatatttttgaagccaaagcaagaaatagttgctaaatcagctgctcagatagtaaat
gaacagcatggaaatatggctcctgctgcacgaatggccatgacaagaagggttcatcct
cttgtttccttgaatccataccaaggcaactggacgataaaagtccggcttacaaacaaa
ggaaccatgcgtacttataagaatgctagaggagaaggttgtgtcttcaatgtagagtta
acagatgaggatggtacacaaatccaagcaacaatgtttaacgaagctgcaaggaagttc
tatgaaaagttccaactggggaaggtctattacatatcaaaaggagctctaaaagtagcc
aacaagcagtttaaaactgtacaaaatgattatgaaatgaccctgaatgaaaattcagag
gttgaggaggccagtaatgaagaaacttttatccctgaagcaaaattcaaatttgttgag
attgaagagttgggtccttatgtcaatgggaaggagcttgtagatgttattggagttgtt
caaagtgtctctcctacaatgagcatacgaaggaagagtaacaatgacattgttcctaag
cgtgatataactattgcggacaagacgaagaagactgttgtggtctctttgtggaatgat
catgctactaatgtagggcaggaattgttggataatgctgataagtttccaattgttgca
attaaatctcttaaagttggagactttcaaggtgtatcactgtcaacattgagtaagagt
attgtactggtaaatccagatacacctgaatcaaaaaagttgagatcctggtatgattct
gaaggtaaaggagcttcaatggcttctattgggtctgatatcagtccttcatctaagggt
ggagtcaagtccatgtactatgacagggtttccctttctcatgtaaccggcaacccatct
ttgggtgaagacaagccttccttttttagcatcagagcatatgtaagcttcatcaagcct
gatcaaacaatgtggtaccgggcttgtaagacatgcaacaagaaagtcacagatgctatt
ggatctgggtattggtgtgaaggatgccaaaagaatgatgatgagtgcagtttaaggtac
ataatggtagtgaaagtttcagatgctagtggtgaagcttggctttctctgttcaatgaa
caagcagagagaatgtttgggtgctctgctgatgagcttgataagctgaaatcacaggag
ggagaagaaaacctattccaacagaaattgaaggaagctatttgggtccctcatcttttc
cggattagtgttgcacagcatgagtacatgaatgagaaaaggcagaggataacagccagg
gctgttgttccagttgattttgcagctgaatccagattattgttggaggagatatcaaag
atgaagacttcacaatag
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